Phenotype measure:   Brown1   open_ent_EPM


  STRAIN COMPARISON PLOT
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Brown1 - total open arms entries



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains13 strains
Mean of the strain means11.0   n 12.8   n
Median of the strain means11.8   n 11.2   n
SD of the strain means± 4.82 ± 2.77
Coefficient of variation (CV)0.436 0.216
Min–max range of strain means3.00   –   19.4   n 10.2   –   17.7   n
Mean sample size per strain11.4   mice 12.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 199.1438 199.1438 5.1429 0.024
strain 12 2526.2768 210.5231 5.4368 < 0.0001
sex:strain 12 876.9191 73.0766 1.8872 0.0354
Residuals 302 11693.9743 38.7218


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 11.8 8.23   12 2.38 0.696 4.0, 34.0 0.16
129S1/SvImJ m 11.2 9.95   12 2.87 0.884 1.0, 33.0 -0.59
A/J f 4.25 2.09   12 0.605 0.493 -1.41
A/J m 11.9 9.35   17 2.27 0.783 1.0, 29.0 -0.33
AKR/J f 5.42 2.57   12 0.743 0.475 -1.17
AKR/J m 11.2 6.96   19 1.6 0.621 3.0, 30.0 -0.59
BALB/cByJ f 10.5 4.79   22 1.02 0.456 2.0, 19.0 -0.11
BALB/cByJ m 10.2 4.81   12 1.39 0.469 4.0, 19.0 -0.95
BALB/cJ f 7.0 4.51   13 1.25 0.644 -0.84
BALB/cJ m 11.2 7.76   12 2.24 0.69 1.0, 24.0 -0.59
C3H/HeJ f 14.0 5.68   15 1.47 0.406 5.0, 25.0 0.62
C3H/HeJ m 14.9 5.08   16 1.27 0.342 7.0, 23.0 0.75
C57BL/6J f 11.8 7.31   12 2.11 0.622 3.0, 25.0 0.16
C57BL/6J m 10.3 7.33   12 2.12 0.709 5.0, 32.0 -0.91
CAST/EiJ f 17.2 7.73   5 3.46 0.449 10.0, 29.0 1.28
CAST/EiJ m 17.7 5.17   10 1.63 0.292 10.0, 27.0 1.76
DBA/2J f 9.17 9.05   12 2.61 0.988 -0.39
DBA/2J m 11.1 4.21   13 1.17 0.38 6.0, 20.0 -0.62
FVB/NJ f 14.2 5.01   12 1.45 0.353 9.0, 24.0 0.66
FVB/NJ m 12.7 2.46   12 0.711 0.194 9.0, 18.0 -0.04
MOLF/EiJ f 13.6 4.78   11 1.44 0.351 5.0, 24.0 0.53
MOLF/EiJ m 10.5 3.83   11 1.15 0.366 4.0, 18.0 -0.84
SJL/J f 13.2 4.36   13 1.21 0.331 6.0, 20.0 0.45
SJL/J m 17.4 5.7   12 1.64 0.327 10.0, 26.0 1.65
SM/J f 19.4 6.16   8 2.18 0.318 12.0, 29.0 1.74
SM/J m 16.4 8.03   11 2.42 0.491 4.0, 25.0 1.29
SPRET/EiJ f 3.0 0.0   1   0.0 0.0 3.0, 3.0 -1.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 11.8333 1.7963 15.3682 8.2984
129S1/SvImJ m 11.25 1.7963 14.7849 7.7151
A/J f 4.25 1.7963 7.7849 0.7151
A/J m 11.9412 1.5092 14.9111 8.9713
AKR/J f 5.4167 1.7963 8.9516 1.8818
AKR/J m 11.2105 1.4276 14.0198 8.4013
BALB/cByJ f 10.5 1.3267 13.1107 7.8893
BALB/cByJ m 10.25 1.7963 13.7849 6.7151
BALB/cJ f 7.0 1.7259 10.3962 3.6038
BALB/cJ m 11.25 1.7963 14.7849 7.7151
C3H/HeJ f 14.0 1.6067 17.1617 10.8383
C3H/HeJ m 14.875 1.5557 17.9363 11.8137
C57BL/6J f 11.75 1.7963 15.2849 8.2151
C57BL/6J m 10.3333 1.7963 13.8682 6.7984
CAST/EiJ f 17.2 2.7829 22.6763 11.7237
CAST/EiJ m 17.7 1.9678 21.5723 13.8277
DBA/2J f 9.1667 1.7963 12.7016 5.6318
DBA/2J m 11.0769 1.7259 14.4732 7.6807
FVB/NJ f 14.1667 1.7963 17.7016 10.6318
FVB/NJ m 12.6667 1.7963 16.2016 9.1318
MOLF/EiJ f 13.6364 1.8762 17.3285 9.9443
MOLF/EiJ m 10.4545 1.8762 14.1466 6.7624
SJL/J f 13.1538 1.7259 16.5501 9.7576
SJL/J m 17.4167 1.7963 20.9516 13.8818
SM/J f 19.375 2.2001 23.7044 15.0456
SM/J m 16.3636 1.8762 20.0557 12.6715


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 11.5417 1.2702 14.0412 9.0421
A/J both 8.0956 1.1731 10.4041 5.7871
AKR/J both 8.3136 1.1473 10.5712 6.056
BALB/cByJ both 10.375 1.1166 12.5722 8.1778
BALB/cJ both 9.125 1.2455 11.576 6.674
C3H/HeJ both 14.4375 1.1182 16.638 12.237
C57BL/6J both 11.0417 1.2702 13.5412 8.5421
CAST/EiJ both 17.45 1.7042 20.8035 14.0965
DBA/2J both 10.1218 1.2455 12.5728 7.6708
FVB/NJ both 13.4167 1.2702 15.9162 10.9171
MOLF/EiJ both 12.0455 1.3267 14.6562 9.4347
SJL/J both 15.2853 1.2455 17.7363 12.8342
SM/J both 17.8693 1.4457 20.7143 15.0244




  GWAS USING LINEAR MIXED MODELS