Project measure / variable:   Brown1   open_dur_EPM

ID, description, units MPD:9455   open_dur_EPM   open arms duration   [s]  
Data set, strains Brown1   inbred   14 strains     sex: both     age: 10wks
Procedure elevated plus maze
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  STRAIN COMPARISON PLOT
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Brown1 - open arms duration



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains13 strains
Mean of the strain means114   s 139   s
Median of the strain means109   s 137   s
SD of the strain means± 48.7 ± 36.8
Coefficient of variation (CV)0.428 0.265
Min–max range of strain means18.2   –   205   s 103   –   198   s
Mean sample size per strain11.4   mice 12.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 14777.9139 14777.9139 6.0757 0.0143
strain 12 455257.1182 37938.0932 15.5976 < 0.0001
sex:strain 12 68584.7111 5715.3926 2.3498 0.0068
Residuals 302 734557.7408 2432.3104


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 139.0 52.2   12 15.1 0.375 75.3, 242.0 0.52
129S1/SvImJ m 107.0 65.8   12 19.0 0.617 4.67, 251.0 -0.86
A/J f 97.7 84.5   12 24.4 0.865 -0.33
A/J m 158.0 70.1   17 17.0 0.445 15.5, 294.0 0.52
AKR/J f 46.7 21.6   12 6.23 0.461 -1.38
AKR/J m 103.0 42.4   19 9.72 0.41 10.8, 178.0 -0.97
BALB/cByJ f 205.0 50.2   22 10.7 0.245 132.0, 288.0 1.87
BALB/cByJ m 198.0 65.1   12 18.8 0.329 51.1, 283.0 1.61
BALB/cJ f 130.0 79.3   13 22.0 0.609 0.33
BALB/cJ m 197.0 56.7   12 16.4 0.288 102.0, 292.0 1.58
C3H/HeJ f 165.0 43.6   15 11.3 0.264 59.3, 226.0 1.05
C3H/HeJ m 178.0 43.0   16 10.8 0.242 102.0, 260.0 1.07
C57BL/6J f 85.3 36.7   12 10.6 0.43 32.3, 136.0 -0.59
C57BL/6J m 104.0 28.0   12 8.07 0.268 52.3, 147.0 -0.94
CAST/EiJ f 160.0 48.5   5 21.7 0.303 104.0, 231.0 0.95
CAST/EiJ m 152.0 29.4   10 9.31 0.193 99.7, 190.0 0.36
DBA/2J f 82.4 64.0   12 18.5 0.777 -0.64
DBA/2J m 104.0 35.1   13 9.74 0.339 52.1, 167.0 -0.94
FVB/NJ f 110.0 36.3   12 10.5 0.329 61.5, 164.0 -0.08
FVB/NJ m 106.0 34.1   12 9.85 0.322 68.6, 169.0 -0.89
MOLF/EiJ f 108.0 30.9   11 9.32 0.285 59.9, 158.0 -0.12
MOLF/EiJ m 104.0 36.6   11 11.0 0.351 33.9, 184.0 -0.94
SJL/J f 101.0 24.6   13 6.83 0.243 61.1, 138.0 -0.26
SJL/J m 137.0 32.4   12 9.35 0.236 94.5, 196.0 -0.05
SM/J f 145.0 29.9   8 10.6 0.207 91.5, 199.0 0.64
SM/J m 156.0 46.6   11 14.1 0.299 49.2, 211.0 0.47
SPRET/EiJ f 18.2 0.0   1   0.0 0.0 18.2, 18.2 -1.96


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 139.0667 14.237 167.083 111.0504
129S1/SvImJ m 106.7308 14.237 134.7471 78.7145
A/J f 97.6583 14.237 125.6746 69.642
A/J m 157.5412 11.9615 181.0796 134.0028
AKR/J f 46.7417 14.237 74.758 18.7254
AKR/J m 103.4737 11.3144 125.7388 81.2086
BALB/cByJ f 205.3182 10.5147 226.0096 184.6268
BALB/cByJ m 197.5917 14.237 225.608 169.5754
BALB/cJ f 130.2 13.6785 157.1172 103.2828
BALB/cJ m 196.8333 14.237 224.8496 168.817
C3H/HeJ f 164.9533 12.734 190.0119 139.8948
C3H/HeJ m 178.0625 12.3296 202.3253 153.7997
C57BL/6J f 85.3167 14.237 113.333 57.3004
C57BL/6J m 104.15 14.237 132.1663 76.1337
CAST/EiJ f 160.0 22.0559 203.4027 116.5973
CAST/EiJ m 152.27 15.5959 182.9603 121.5797
DBA/2J f 82.4033 14.237 110.4196 54.387
DBA/2J m 103.7 13.6785 130.6172 76.7828
FVB/NJ f 110.3667 14.237 138.383 82.3504
FVB/NJ m 106.0333 14.237 134.0496 78.017
MOLF/EiJ f 108.3182 14.8701 137.5803 79.0561
MOLF/EiJ m 104.3636 14.8701 133.6257 75.1016
SJL/J f 101.3538 13.6785 128.271 74.4366
SJL/J m 137.0417 14.237 165.058 109.0254
SM/J f 144.5625 17.4367 178.8753 110.2497
SM/J m 156.0182 14.8701 185.2803 126.7561


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 122.8987 10.0671 142.7093 103.0882
A/J both 127.5998 9.2974 145.8957 109.3038
AKR/J both 75.1077 9.0927 93.0007 57.2146
BALB/cByJ both 201.4549 8.8495 218.8693 184.0405
BALB/cJ both 163.5167 9.8716 182.9425 144.0909
C3H/HeJ both 171.5079 8.8625 188.9479 154.0679
C57BL/6J both 94.7333 10.0671 114.5439 74.9228
CAST/EiJ both 156.135 13.5064 182.7136 129.5564
DBA/2J both 93.0517 9.8716 112.4775 73.6259
FVB/NJ both 108.2 10.0671 128.0105 88.3895
MOLF/EiJ both 106.3409 10.5147 127.0323 85.6495
SJL/J both 119.1978 9.8716 138.6236 99.7719
SM/J both 150.2903 11.4582 172.8383 127.7424




  GWAS USING LINEAR MIXED MODELS