Phenotype measure:   Brown1   light_dur_LD


  STRAIN COMPARISON PLOT
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Brown1 - light zone duration



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means102   s 106   s
Median of the strain means87.7   s 101   s
SD of the strain means± 49.1 ± 38.4
Coefficient of variation (CV)0.480 0.361
Min–max range of strain means51.2   –   205   s 38.9   –   180   s
Mean sample size per strain12.9   mice 12.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2285.6441 2285.6441 0.6346 0.4262
strain 13 603395.5823 46415.0448 12.8865 < 0.0001
sex:strain 13 59461.2919 4573.9455 1.2699 0.2293
Residuals 337 1213822.6384 3601.8476


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 205.0 85.7   12 24.7 0.418 23.0, 293.0 2.09
129S1/SvImJ m 142.0 112.0   12 32.3 0.788 4.01, 299.0 0.93
A/J f 76.5 85.7   12 24.7 1.12 -0.53
A/J m 134.0 134.0   16 33.6 1.0 0.72
AKR/J f 51.2 32.3   12 9.32 0.63 14.2, 146.0 -1.04
AKR/J m 58.5 32.1   19 7.36 0.548 16.0, 144.0 -1.25
BALB/cByJ f 52.9 68.0   22 14.5 1.28 3.35, 297.0 -1.01
BALB/cByJ m 38.9 36.7   12 10.6 0.945 -1.76
BALB/cJ f 87.7 67.9   14 18.2 0.775 8.84, 238.0 -0.3
BALB/cJ m 104.0 106.0   12 30.5 1.01 7.3, 300.0 -0.06
C3H/HeJ f 138.0 50.0   19 11.5 0.363 32.2, 233.0 0.73
C3H/HeJ m 138.0 44.9   13 12.4 0.326 20.1, 195.0 0.83
C57BL/6J f 183.0 35.2   12 10.2 0.192 112.0, 220.0 1.64
C57BL/6J m 180.0 35.1   13 9.73 0.195 113.0, 229.0 1.92
CAST/EiJ f 87.6 36.1   9 12.0 0.412 37.4, 170.0 -0.3
CAST/EiJ m 90.1 35.7   12 10.3 0.396 25.3, 162.0 -0.42
DBA/2J f 54.6 22.0   14 5.89 0.403 21.0, 104.0 -0.97
DBA/2J m 87.7 45.7   13 12.7 0.521 9.29, 176.0 -0.49
FVB/NJ f 148.0 28.7   12 8.3 0.194 112.0, 217.0 0.93
FVB/NJ m 140.0 16.1   12 4.66 0.116 115.0, 170.0 0.88
MOLF/EiJ f 105.0 43.0   12 12.4 0.411 37.1, 186.0 0.05
MOLF/EiJ m 98.9 35.9   11 10.8 0.363 12.5, 139.0 -0.19
SJL/J f 105.0 40.4   13 11.2 0.386 46.5, 185.0 0.05
SJL/J m 122.0 48.1   12 13.9 0.394 41.2, 186.0 0.41
SM/J f 56.4 28.7   10 9.08 0.509 15.7, 124.0 -0.93
SM/J m 70.0 36.6   11 11.0 0.523 26.7, 133.0 -0.95
SPRET/EiJ f 81.6 56.0   13 15.5 0.686 8.7, 211.0 -0.42
SPRET/EiJ m 84.5 41.7   11 12.6 0.493 31.5, 150.0 -0.57


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 204.8333 17.325 238.912 170.7547
129S1/SvImJ m 141.8258 17.325 175.9045 107.7472
A/J f 76.5242 17.325 110.6028 42.4455
A/J m 134.0306 15.0038 163.5436 104.5176
AKR/J f 51.225 17.325 85.3037 17.1463
AKR/J m 58.5105 13.7685 85.5935 31.4275
BALB/cByJ f 52.9277 12.7953 78.0965 27.759
BALB/cByJ m 38.8517 17.325 72.9303 4.773
BALB/cJ f 87.6743 16.0398 119.225 56.1236
BALB/cJ m 104.4417 17.325 138.5203 70.363
C3H/HeJ f 137.5526 13.7685 164.6356 110.4697
C3H/HeJ m 137.6154 16.6453 170.3571 104.8737
C57BL/6J f 183.1667 17.325 217.2453 149.088
C57BL/6J m 180.0 16.6453 212.7417 147.2583
CAST/EiJ f 87.6 20.0051 126.9507 48.2493
CAST/EiJ m 90.0583 17.325 124.137 55.9797
DBA/2J f 54.6071 16.0398 86.1579 23.0564
DBA/2J m 87.7377 16.6453 120.4794 54.996
FVB/NJ f 148.25 17.325 182.3287 114.1713
FVB/NJ m 139.75 17.325 173.8287 105.6713
MOLF/EiJ f 104.5417 17.325 138.6203 70.463
MOLF/EiJ m 98.8818 18.0953 134.4758 63.2878
SJL/J f 104.6846 16.6453 137.4263 71.9429
SJL/J m 122.0 17.325 156.0787 87.9213
SM/J f 56.4 18.9785 93.7313 19.0687
SM/J m 69.9727 18.0953 105.5667 34.3787
SPRET/EiJ f 81.5846 16.6453 114.3263 48.8429
SPRET/EiJ m 84.5182 18.0953 120.1122 48.9242


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 173.3296 12.2506 197.4268 149.2323
A/J both 105.2774 11.4594 127.8183 82.7365
AKR/J both 54.8678 11.0649 76.6327 33.1029
BALB/cByJ both 45.8897 10.7689 67.0724 24.707
BALB/cJ both 96.058 11.805 119.2787 72.8373
C3H/HeJ both 137.584 10.8009 158.8296 116.3384
C57BL/6J both 181.5833 12.0127 205.2126 157.954
CAST/EiJ both 88.8292 13.2322 114.8572 62.8012
DBA/2J both 71.1724 11.5579 93.9071 48.4377
FVB/NJ both 144.0 12.2506 168.0973 119.9027
MOLF/EiJ both 101.7117 12.5259 126.3506 77.0729
SJL/J both 113.3423 12.0127 136.9716 89.713
SM/J both 63.1864 13.1113 88.9767 37.3961
SPRET/EiJ both 83.0514 12.2934 107.2328 58.87




  GWAS USING LINEAR MIXED MODELS