Phenotype measure:   Brown1   close_prop_EZM



  STRAIN COMPARISON PLOT
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Brown1 - closed zone, proportion of total time



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains13 strains
Mean of the strain means0.631   ratio 0.621   ratio
Median of the strain means0.615   ratio 0.596   ratio
SD of the strain means± 0.135 ± 0.131
Coefficient of variation (CV)0.215 0.211
Min–max range of strain means0.435   –   0.840   ratio 0.432   –   0.813   ratio
Mean sample size per strain10.1   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0129 0.0129 0.3307 0.566
strain 9 2.6963 0.2996 7.6844 < 0.0001
sex:strain 9 0.2697 0.03 0.7688 0.6454
Residuals 170 6.6277 0.039


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.673 0.207   10 0.0654 0.308 0.149, 0.837 0.31
129S1/SvImJ m 0.792 0.109   10 0.0345 0.138 0.552, 0.906 1.3
A/J f 0.546 0.328   12 0.0947 0.601 0.009, 1.0 -0.63
A/J m 0.432 0.222   6 0.0904 0.513 0.161, 0.822 -1.44
AKR/J f 0.738 0.167   12 0.0481 0.226 0.466, 0.93 0.79
AKR/J m 0.813 0.133   6 0.0542 0.163 0.582, 0.95 1.46
BALB/cByJ f 0.508 0.27   22 0.0575 0.531 0.0, 1.0 -0.91
BALB/cByJ m 0.451 0.28   12 0.0809 0.621 0.0, 0.852 -1.3
BALB/cJ f 0.615 0.256   14 0.0685 0.417 0.185, 0.964 -0.12
BALB/cJ m 0.596 0.228   10 0.0722 0.383 0.289, 0.992 -0.19
C57BL/6J f 0.776 0.0641   10 0.0203 0.0826 0.68, 0.863 1.07
C57BL/6J m 0.806 0.0738   10 0.0233 0.0915 0.713, 0.91 1.41
CAST/EiJ f 0.767 0.0283   2   0.02 0.0369 0.747, 0.787 1.01
CAST/EiJ m 0.717 0.1   5 0.0449 0.14 0.617, 0.847 0.73
DBA/2J f 0.84 0.131   6 0.0534 0.156 0.676, 0.99 1.55
DBA/2J m 0.689 0.056   10 0.0177 0.0812 0.594, 0.774 0.52
FVB/NJ f 0.494 0.123   12 0.0356 0.25 0.376, 0.755 -1.01
FVB/NJ m 0.519 0.122   12 0.0352 0.235 0.341, 0.713 -0.78
MOLF/EiJ m 0.6 0.123   10 0.0388 0.204 0.408, 0.811 -0.16
SJL/J f 0.546 0.049   6 0.02 0.0896 0.492, 0.625 -0.63
SJL/J m 0.578 0.0898   3 0.0519 0.155 0.475, 0.638 -0.33
SM/J m 0.513 0.228   6 0.0931 0.444 0.155, 0.769 -0.82
SPRET/EiJ f 0.435 0.235   9 0.0784 0.541 0.034, 0.756 -1.45
SPRET/EiJ m 0.569 0.0   1   0.0 0.0 0.569, 0.569 -0.4


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.6725 0.0624 0.7958 0.5492
129S1/SvImJ m 0.7922 0.0624 0.9155 0.6689
A/J f 0.5459 0.057 0.6584 0.4334
A/J m 0.4317 0.0806 0.5908 0.2725
AKR/J f 0.7379 0.057 0.8504 0.6254
AKR/J m 0.8127 0.0806 0.9718 0.6535
BALB/cByJ f 0.508 0.0421 0.5911 0.4249
BALB/cByJ m 0.4511 0.057 0.5636 0.3386
BALB/cJ f 0.6154 0.0528 0.7195 0.5112
BALB/cJ m 0.5963 0.0624 0.7196 0.473
C57BL/6J f 0.7755 0.0624 0.8988 0.6522
C57BL/6J m 0.806 0.0624 0.9293 0.6827
CAST/EiJ f 0.767 0.1396 1.0426 0.4914
CAST/EiJ m 0.7166 0.0883 0.8909 0.5423
DBA/2J f 0.8398 0.0806 0.999 0.6807
DBA/2J m 0.689 0.0624 0.8123 0.5657
FVB/NJ f 0.4937 0.057 0.6062 0.3811
FVB/NJ m 0.5191 0.057 0.6316 0.4066
SJL/J f 0.5463 0.0806 0.7055 0.3872
SJL/J m 0.5783 0.114 0.8034 0.3533


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.7323 0.0442 0.8195 0.6452
A/J both 0.4888 0.0494 0.5862 0.3913
AKR/J both 0.7753 0.0494 0.8727 0.6778
BALB/cByJ both 0.4795 0.0354 0.5495 0.4096
BALB/cJ both 0.6058 0.0409 0.6865 0.5251
C57BL/6J both 0.7907 0.0442 0.8779 0.7036
CAST/EiJ both 0.7418 0.0826 0.9049 0.5787
DBA/2J both 0.7644 0.051 0.8651 0.6638
FVB/NJ both 0.5064 0.0403 0.5859 0.4268
SJL/J both 0.5623 0.0698 0.7001 0.4245




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.