Phenotype measure:   Brown1   close_ent_EZM


  STRAIN COMPARISON PLOT
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Brown1 - closed zone entries



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains13 strains
Mean of the strain means9.74   n 10.5   n
Median of the strain means9.50   n 11.7   n
SD of the strain means± 5.15 ± 4.28
Coefficient of variation (CV)0.529 0.408
Min–max range of strain means3.22   –   20.8   n 3.00   –   16.6   n
Mean sample size per strain10.1   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 31.6553 31.6553 1.0701 0.3024
strain 9 2380.7283 264.5254 8.9419 < 0.0001
sex:strain 9 740.5321 82.2813 2.7814 0.0046
Residuals 170 5029.0632 29.5827


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 6.2 3.12   10 0.987 0.503 2.0, 11.0 -0.69
129S1/SvImJ m 7.8 4.49   10 1.42 0.576 2.0, 16.0 -0.63
A/J f 5.83 6.64   12 1.92 1.14 1.0, 25.0 -0.76
A/J m 3.0 1.26   6 0.516 0.422 1.0, 5.0 -1.75
AKR/J f 11.1 6.02   12 1.74 0.543 4.0, 24.0 0.26
AKR/J m 6.83 3.49   6 1.42 0.51 3.0, 13.0 -0.86
BALB/cByJ f 9.82 6.42   22 1.37 0.654 0.02
BALB/cByJ m 12.4 8.44   12 2.44 0.679 0.44
BALB/cJ f 6.79 4.82   14 1.29 0.711 2.0, 20.0 -0.57
BALB/cJ m 14.2 7.77   10 2.46 0.547 1.0, 25.0 0.86
C57BL/6J f 9.5 2.32   10 0.734 0.244 5.0, 13.0 -0.05
C57BL/6J m 7.5 4.25   10 1.34 0.567 4.0, 14.0 -0.7
CAST/EiJ f 9.5 2.12   2   1.5 0.223 8.0, 11.0 -0.05
CAST/EiJ m 12.2 4.27   5 1.91 0.35 6.0, 18.0 0.4
DBA/2J f 7.17 5.64   6 2.3 0.786 2.0, 15.0 -0.5
DBA/2J m 11.5 3.69   10 1.17 0.321 7.0, 18.0 0.23
FVB/NJ f 17.2 5.28   12 1.52 0.306 8.0, 23.0 1.45
FVB/NJ m 16.6 4.29   12 1.24 0.259 11.0, 24.0 1.42
MOLF/EiJ m 13.6 4.12   10 1.3 0.303 6.0, 19.0 0.72
SJL/J f 20.8 6.79   6 2.77 0.326 11.0, 27.0 2.15
SJL/J m 11.7 1.15   3 0.667 0.099 11.0, 13.0 0.28
SM/J m 15.2 6.05   6 2.47 0.399 7.0, 23.0 1.1
SPRET/EiJ f 3.22 1.48   9 0.494 0.46 1.0, 5.0 -1.26
SPRET/EiJ m 4.0 0.0   1   0.0 0.0 4.0, 4.0 -1.52


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 6.2 1.72 9.5952 2.8048
129S1/SvImJ m 7.8 1.72 11.1952 4.4048
A/J f 5.8333 1.5701 8.9327 2.7339
A/J m 3.0 2.2205 7.3832 0.0
AKR/J f 11.0833 1.5701 14.1827 7.9839
AKR/J m 6.8333 2.2205 11.2166 2.4501
BALB/cByJ f 9.8182 1.1596 12.1072 7.5291
BALB/cByJ m 12.4167 1.5701 15.5161 9.3173
BALB/cJ f 6.7857 1.4536 9.6552 3.9162
BALB/cJ m 14.2 1.72 17.5952 10.8048
C57BL/6J f 9.5 1.72 12.8952 6.1048
C57BL/6J m 7.5 1.72 10.8952 4.1048
CAST/EiJ f 9.5 3.846 17.092 1.908
CAST/EiJ m 12.2 2.4324 17.0016 7.3984
DBA/2J f 7.1667 2.2205 11.5499 2.7834
DBA/2J m 11.5 1.72 14.8952 8.1048
FVB/NJ f 17.25 1.5701 20.3494 14.1506
FVB/NJ m 16.5833 1.5701 19.6827 13.4839
SJL/J f 20.8333 2.2205 25.2166 16.4501
SJL/J m 11.6667 3.1402 17.8655 5.4678


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 7.0 1.2162 9.4008 4.5992
A/J both 4.4167 1.3598 7.1008 1.7325
AKR/J both 8.9583 1.3598 11.6425 6.2742
BALB/cByJ both 11.1174 0.9759 13.044 9.1909
BALB/cJ both 10.4929 1.126 12.7156 8.2702
C57BL/6J both 8.5 1.2162 10.9008 6.0992
CAST/EiJ both 10.85 2.2753 15.3415 6.3585
DBA/2J both 9.3333 1.4043 12.1055 6.5611
FVB/NJ both 16.9167 1.1102 19.1083 14.7251
SJL/J both 16.25 1.923 20.046 12.454




  GWAS USING LINEAR MIXED MODELS