Phenotype measure:   Brown1   headip_EPM


  STRAIN COMPARISON PLOT
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Brown1 - total head-dips



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains13 strains
Mean of the strain means17.9   n 20.7   n
Median of the strain means14.3   n 20.3   n
SD of the strain means± 10.3 ± 9.15
Coefficient of variation (CV)0.574 0.442
Min–max range of strain means0   –   34.3   n 9.25   –   37.7   n
Mean sample size per strain12.5   mice 13.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 119.201 119.201 0.7327 0.3926
strain 12 24614.7592 2051.2299 12.6091 < 0.0001
sex:strain 12 4398.6638 366.5553 2.2532 0.0095
Residuals 323 52545.3301 162.679


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 11.8 10.2   12 2.95 0.87 3.0, 31.0 -0.59
129S1/SvImJ m 9.25 8.88   12 2.56 0.96 1.0, 29.0 -1.25
A/J f 14.2 8.49   12 2.45 0.6 3.0, 36.0 -0.36
A/J m 29.3 17.3   19 3.98 0.592 1.0, 62.0 0.94
AKR/J f 8.42 6.39   12 1.84 0.759 -0.92
AKR/J m 21.4 10.2   19 2.34 0.477 0.08
BALB/cByJ f 30.7 11.0   22 2.35 0.359 12.0, 52.0 1.24
BALB/cByJ m 17.2 12.3   12 3.55 0.712 3.0, 46.0 -0.38
BALB/cJ f 25.1 32.7   14 8.74 1.3 0.7
BALB/cJ m 26.3 17.9   12 5.17 0.68 2.0, 58.0 0.61
C3H/HeJ f 34.3 8.52   19 1.96 0.249 21.0, 50.0 1.59
C3H/HeJ m 37.7 10.1   18 2.38 0.267 19.0, 59.0 1.86
C57BL/6J f 13.6 9.9   12 2.86 0.729 1.0, 32.0 -0.42
C57BL/6J m 15.0 13.7   13 3.79 0.91 3.0, 43.0 -0.62
CAST/EiJ f 18.7 8.16   11 2.46 0.436 2.0, 31.0 0.08
CAST/EiJ m 20.3 8.92   12 2.57 0.439 8.0, 34.0 -0.04
DBA/2J f 8.62 8.06   13 2.23 0.935 -0.9
DBA/2J m 10.2 6.69   13 1.86 0.659 4.0, 26.0 -1.15
FVB/NJ f 12.1 8.28   12 2.39 0.686 1.0, 30.0 -0.57
FVB/NJ m 10.9 5.58   12 1.61 0.511 1.0, 20.0 -1.07
MOLF/EiJ f 14.5 9.57   11 2.89 0.662 6.0, 38.0 -0.33
MOLF/EiJ m 12.3 6.03   11 1.82 0.492 5.0, 27.0 -0.92
SJL/J f 26.7 15.1   13 4.19 0.566 4.0, 64.0 0.85
SJL/J m 29.3 15.1   12 4.35 0.513 0.94
SM/J f 32.1 9.85   9 3.28 0.307 18.0, 46.0 1.38
SM/J m 29.8 15.8   12 4.57 0.532 9.0, 54.0 1.0
SPRET/EiJ f 0.0 0.0   1   0.0 0.0 -1.74


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 11.75 3.6819 18.9936 4.5064
129S1/SvImJ m 9.25 3.6819 16.4936 2.0064
A/J f 14.1667 3.6819 21.4103 6.9231
A/J m 29.2632 2.9261 35.0198 23.5065
AKR/J f 8.4167 3.6819 15.6603 1.1731
AKR/J m 21.3684 2.9261 27.125 15.6118
BALB/cByJ f 30.7273 2.7193 36.077 25.3775
BALB/cByJ m 17.25 3.6819 24.4936 10.0064
BALB/cJ f 25.1429 3.4088 31.8491 18.4366
BALB/cJ m 26.3333 3.6819 33.5769 19.0897
C3H/HeJ f 34.2632 2.9261 40.0198 28.5065
C3H/HeJ m 37.7222 3.0063 43.6366 31.8079
C57BL/6J f 13.5833 3.6819 20.8269 6.3397
C57BL/6J m 15.0 3.5375 21.9594 8.0406
CAST/EiJ f 18.7273 3.8456 26.293 11.1616
CAST/EiJ m 20.3333 3.6819 27.5769 13.0897
DBA/2J f 8.6154 3.5375 15.5748 1.656
DBA/2J m 10.1538 3.5375 17.1133 3.1944
FVB/NJ f 12.0833 3.6819 19.3269 4.8397
FVB/NJ m 10.9167 3.6819 18.1603 3.6731
MOLF/EiJ f 14.4545 3.8456 22.0202 6.8889
MOLF/EiJ m 12.2727 3.8456 19.8384 4.707
SJL/J f 26.6923 3.5375 33.6517 19.7329
SJL/J m 29.3333 3.6819 36.5769 22.0897
SM/J f 32.1111 4.2515 40.4753 23.7469
SM/J m 29.75 3.6819 36.9936 22.5064


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 10.5 2.6035 15.622 5.378
A/J both 21.7149 2.3515 26.3411 17.0887
AKR/J both 14.8925 2.3515 19.5188 10.2663
BALB/cByJ both 23.9886 2.2886 28.4911 19.4862
BALB/cJ both 25.7381 2.5088 30.6738 20.8024
C3H/HeJ both 35.9927 2.0976 40.1194 31.866
C57BL/6J both 14.2917 2.553 19.3142 9.2691
CAST/EiJ both 19.5303 2.662 24.7674 14.2932
DBA/2J both 9.3846 2.5014 14.3057 4.4636
FVB/NJ both 11.5 2.6035 16.622 6.378
MOLF/EiJ both 13.3636 2.7193 18.7134 8.0139
SJL/J both 28.0128 2.553 33.0353 22.9903
SM/J both 30.9306 2.8121 36.4629 25.3982




  GWAS USING LINEAR MIXED MODELS