Phenotype measure:   Brown1   urination_LD


  STRAIN COMPARISON PLOT
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Brown1 - urine puddle count



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means0.817   n 1.46   n
Median of the strain means0.406   n 1.13   n
SD of the strain means± 0.731 ± 1.05
Coefficient of variation (CV)0.895 0.717
Min–max range of strain means0   –   2.50   n 0   –   3.53   n
Mean sample size per strain12.6   mice 13.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 26.3926 26.3926 13.1622 0.0003
strain 13 268.3415 20.6417 10.2941 < 0.0001
sex:strain 13 55.3966 4.2613 2.1251 0.0125
Residuals 345 691.7888 2.0052


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.08 0.669   12 0.193 0.617 0.36
129S1/SvImJ m 1.42 1.44   12 0.417 1.02 -0.04
A/J f 0.25 0.622   12 0.179 2.49 -0.78
A/J m 0.7 1.69   20 0.378 2.41 -0.73
AKR/J f 1.75 1.54   12 0.446 0.883 1.28
AKR/J m 3.53 2.61   19 0.599 0.741 1.98
BALB/cByJ f 2.5 1.85   22 0.393 0.738 2.3
BALB/cByJ m 2.42 1.16   12 0.336 0.482 0.92
BALB/cJ f 1.64 0.842   14 0.225 0.512 1.13
BALB/cJ m 1.5 1.93   12 0.557 1.29 0.04
C3H/HeJ f 0.412 0.712   17 0.173 1.73 -0.55
C3H/HeJ m 0.333 0.686   18 0.162 2.06 -1.08
C57BL/6J f 0.333 0.651   12 0.188 1.95 -0.66
C57BL/6J m 0.923 1.04   13 0.288 1.12 -0.51
CAST/EiJ f 0.2 0.422   10 0.133 2.11 -0.84
CAST/EiJ m 0.0 0.0   12 0.0 0.0 -1.39
DBA/2J f 1.07 0.997   14 0.267 0.931 0.35
DBA/2J m 1.08 1.26   13 0.348 1.17 -0.36
FVB/NJ f 0.0 0.0   12 0.0 0.0 -1.12
FVB/NJ m 0.833 0.718   12 0.207 0.861 -0.6
MOLF/EiJ f 0.4 0.516   10 0.163 1.29 -0.57
MOLF/EiJ m 1.18 1.33   11 0.4 1.12 -0.27
SJL/J f 1.08 1.32   13 0.366 1.23 0.36
SJL/J m 2.83 2.04   12 0.588 0.719 1.31
SM/J f 0.333 0.5   9 0.167 1.5 -0.66
SM/J m 2.83 3.49   12 1.01 1.23 1.31
SPRET/EiJ f 0.385 1.12   13 0.311 2.91 -0.59
SPRET/EiJ m 0.846 0.899   13 0.249 1.06 -0.59


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.0833 0.4088 1.8873 0.2793
129S1/SvImJ m 1.4167 0.4088 2.2207 0.6127
A/J f 0.25 0.4088 1.054 -0.554
A/J m 0.7 0.3166 1.3228 0.0772
AKR/J f 1.75 0.4088 2.554 0.946
AKR/J m 3.5263 0.3249 4.1653 2.8874
BALB/cByJ f 2.5 0.3019 3.0938 1.9062
BALB/cByJ m 2.4167 0.4088 3.2207 1.6127
BALB/cJ f 1.6429 0.3785 2.3872 0.8985
BALB/cJ m 1.5 0.4088 2.304 0.696
C3H/HeJ f 0.4118 0.3434 1.0873 -0.2637
C3H/HeJ m 0.3333 0.3338 0.9898 -0.3231
C57BL/6J f 0.3333 0.4088 1.1373 -0.4707
C57BL/6J m 0.9231 0.3927 1.6955 0.1506
CAST/EiJ f 0.2 0.4478 1.0807 -0.6807
CAST/EiJ m 0.0 0.4088 0.804 -0.804
DBA/2J f 1.0714 0.3785 1.8158 0.3271
DBA/2J m 1.0769 0.3927 1.8494 0.3045
FVB/NJ f 0.0 0.4088 0.804 -0.804
FVB/NJ m 0.8333 0.4088 1.6373 0.0293
MOLF/EiJ f 0.4 0.4478 1.2807 -0.4807
MOLF/EiJ m 1.1818 0.427 2.0216 0.3421
SJL/J f 1.0769 0.3927 1.8494 0.3045
SJL/J m 2.8333 0.4088 3.6373 2.0293
SM/J f 0.3333 0.472 1.2617 -0.5951
SM/J m 2.8333 0.4088 3.6373 2.0293
SPRET/EiJ f 0.3846 0.3927 1.1571 -0.3879
SPRET/EiJ m 0.8462 0.3927 1.6186 0.0737


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.25 0.289 1.8185 0.6815
A/J both 0.475 0.2585 0.9835 -0.0335
AKR/J both 2.6382 0.2611 3.1517 2.1247
BALB/cByJ both 2.4583 0.2541 2.9581 1.9586
BALB/cJ both 1.5714 0.2785 2.1193 1.0236
C3H/HeJ both 0.3725 0.2395 0.8435 -0.0984
C57BL/6J both 0.6282 0.2834 1.1857 0.0707
CAST/EiJ both 0.1 0.3032 0.6963 -0.4963
DBA/2J both 1.0742 0.2727 1.6105 0.5378
FVB/NJ both 0.4167 0.289 0.9852 -0.1519
MOLF/EiJ both 0.7909 0.3094 1.3994 0.1824
SJL/J both 1.9551 0.2834 2.5126 1.3976
SM/J both 1.5833 0.3122 2.1974 0.9693
SPRET/EiJ both 0.6154 0.2777 1.1616 0.0692




  GWAS USING LINEAR MIXED MODELS