Phenotype measure:   Brown1   stretch_LD



  STRAIN COMPARISON PLOT
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Brown1 - total stretch attends



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means7.65   n 5.40   n
Median of the strain means7.21   n 4.30   n
SD of the strain means± 4.90 ± 4.34
Coefficient of variation (CV)0.640 0.803
Min–max range of strain means1.00   –   15.7   n 0.538   –   13.8   n
Mean sample size per strain12.9   mice 13.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 590.2027 590.2027 17.0721 < 0.0001
strain 13 7193.2362 553.3259 16.0054 < 0.0001
sex:strain 13 514.706 39.5928 1.1453 0.3195
Residuals 348 12030.7886 34.5712


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 11.9 6.05   12 1.75 0.508 1.0, 26.0 0.87
129S1/SvImJ m 7.08 5.42   12 1.56 0.765 0.0, 16.0 0.39
A/J f 11.1 4.74   12 1.37 0.427 5.0, 19.0 0.7
A/J m 11.6 8.76   20 1.96 0.758 0.0, 28.0 1.43
AKR/J f 8.33 5.38   12 1.55 0.646 1.0, 21.0 0.14
AKR/J m 9.0 6.88   19 1.58 0.764 0.0, 23.0 0.83
BALB/cByJ f 15.5 9.35   22 1.99 0.605 1.0, 30.0 1.6
BALB/cByJ m 10.2 5.51   12 1.59 0.538 5.0, 23.0 1.11
BALB/cJ f 15.7 10.5   14 2.79 0.665 2.0, 33.0 1.64
BALB/cJ m 13.8 9.22   12 2.66 0.667 2.0, 34.0 1.94
C3H/HeJ f 8.89 6.59   19 1.51 0.741 1.0, 22.0 0.25
C3H/HeJ m 5.89 5.65   18 1.33 0.959 0.0, 17.0 0.11
C57BL/6J f 2.42 2.71   12 0.783 1.12 0.0, 7.0 -1.07
C57BL/6J m 0.538 0.776   13 0.215 1.44 0.0, 2.0 -1.12
CAST/EiJ f 1.89 3.33   9 1.11 1.76 0.0, 10.0 -1.18
CAST/EiJ m 1.33 1.44   12 0.414 1.08 0.0, 4.0 -0.94
DBA/2J f 5.5 5.21   14 1.39 0.948 0.0, 18.0 -0.44
DBA/2J m 3.31 2.95   13 0.82 0.893 0.0, 9.0 -0.48
FVB/NJ f 2.42 3.0   12 0.866 1.24 0.0, 9.0 -1.07
FVB/NJ m 0.917 1.38   12 0.398 1.5 0.0, 4.0 -1.03
MOLF/EiJ f 6.08 4.68   12 1.35 0.769 0.0, 14.0 -0.32
MOLF/EiJ m 1.73 1.9   11 0.574 1.1 0.0, 6.0 -0.85
SJL/J f 10.8 7.5   13 2.08 0.692 2.0, 27.0 0.64
SJL/J m 3.42 1.88   12 0.543 0.551 1.0, 7.0 -0.46
SM/J f 5.6 7.11   10 2.25 1.27 0.0, 24.0 -0.42
SM/J m 5.18 5.67   11 1.71 1.09 0.0, 18.0 -0.05
SPRET/EiJ f 1.0 0.707   13 0.196 0.707 0.0, 2.0 -1.36
SPRET/EiJ m 1.62 1.56   13 0.432 0.964 0.0, 5.0 -0.87


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 11.9167 1.6973 15.255 8.5783
129S1/SvImJ m 7.0833 1.6973 10.4217 3.745
A/J f 11.0833 1.6973 14.4217 7.745
A/J m 11.55 1.3147 14.1359 8.9641
AKR/J f 8.3333 1.6973 11.6717 4.995
AKR/J m 9.0 1.3489 11.653 6.347
BALB/cByJ f 15.4545 1.2536 17.9201 12.989
BALB/cByJ m 10.25 1.6973 13.5883 6.9117
BALB/cJ f 15.7143 1.5714 18.805 12.6236
BALB/cJ m 13.8333 1.6973 17.1717 10.495
C3H/HeJ f 8.8947 1.3489 11.5478 6.2417
C3H/HeJ m 5.8889 1.3859 8.6146 3.1632
C57BL/6J f 2.4167 1.6973 5.755 0.0
C57BL/6J m 0.5385 1.6307 3.7458 0.0
CAST/EiJ f 1.8889 1.9599 5.7436 0.0
CAST/EiJ m 1.3333 1.6973 4.6717 0.0
DBA/2J f 5.5 1.5714 8.5907 2.4093
DBA/2J m 3.3077 1.6307 6.515 0.1003
FVB/NJ f 2.4167 1.6973 5.755 0.0
FVB/NJ m 0.9167 1.6973 4.255 0.0
MOLF/EiJ f 6.0833 1.6973 9.4217 2.745
MOLF/EiJ m 1.7273 1.7728 5.214 0.0
SJL/J f 10.8462 1.6307 14.0535 7.6388
SJL/J m 3.4167 1.6973 6.755 0.0783
SM/J f 5.6 1.8593 9.2569 1.9431
SM/J m 5.1818 1.7728 8.6686 1.6951
SPRET/EiJ f 1.0 1.6307 4.2074 0.0
SPRET/EiJ m 1.6154 1.6307 4.8227 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 9.5 1.2002 11.8605 7.1395
A/J both 11.3167 1.0735 13.428 9.2053
AKR/J both 8.6667 1.084 10.7987 6.5346
BALB/cByJ both 12.8523 1.055 14.9273 10.7772
BALB/cJ both 14.7738 1.1565 17.0485 12.4991
C3H/HeJ both 7.3918 0.967 9.2937 5.49
C57BL/6J both 1.4776 1.1769 3.7923 0.0
CAST/EiJ both 1.6111 1.2964 4.1608 0.0
DBA/2J both 4.4038 1.1323 6.6309 2.1768
FVB/NJ both 1.6667 1.2002 4.0272 0.0
MOLF/EiJ both 3.9053 1.2272 6.3189 1.4917
SJL/J both 7.1314 1.1769 9.4461 4.8167
SM/J both 5.3909 1.2845 7.9173 2.8645
SPRET/EiJ both 1.3077 1.1531 3.5756 0.0




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.