Phenotype measure:   Brown1   urination_d1_OFT



  STRAIN COMPARISON PLOT
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Brown1 - urine puddle count, 5 min test, day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means1.09   n 1.26   n
Median of the strain means0.834   n 1.03   n
SD of the strain means± 1.00 ± 0.831
Coefficient of variation (CV)0.917 0.660
Min–max range of strain means0.100   –   3.95   n 0.278   –   2.58   n
Mean sample size per strain12.9   mice 13.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1808 0.1808 0.0714 0.7895
strain 13 287.9036 22.1464 8.7456 < 0.0001
sex:strain 13 76.5585 5.8891 2.3256 0.0057
Residuals 347 878.7064 2.5323


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.42 0.515   12 0.149 0.363 1.0, 2.0 0.32
129S1/SvImJ m 0.917 0.793   12 0.229 0.865 0.0, 2.0 -0.41
A/J f 0.5 0.674   12 0.195 1.35 0.0, 2.0 -0.59
A/J m 0.3 0.571   20 0.128 1.9 0.0, 2.0 -1.15
AKR/J f 1.25 1.54   12 0.446 1.24 0.0, 5.0 0.15
AKR/J m 2.47 1.37   17 0.333 0.556 1.0, 5.0 1.46
BALB/cByJ f 3.95 3.32   22 0.707 0.839 1.0, 11.0 2.85
BALB/cByJ m 1.75 1.22   12 0.351 0.695 0.0, 4.0 0.59
BALB/cJ f 2.29 2.64   14 0.707 1.16 0.0, 8.0 1.19
BALB/cJ m 2.58 2.15   12 0.621 0.833 0.0, 6.0 1.59
C3H/HeJ f 0.526 0.905   19 0.208 1.72 0.0, 3.0 -0.57
C3H/HeJ m 0.278 0.826   18 0.195 2.98 0.0, 3.0 -1.18
C57BL/6J f 0.167 0.389   12 0.112 2.34 0.0, 1.0 -0.92
C57BL/6J m 0.692 0.855   13 0.237 1.23 0.0, 2.0 -0.68
CAST/EiJ f 0.5 0.527   10 0.167 1.05 0.0, 1.0 -0.59
CAST/EiJ m 0.5 0.798   12 0.23 1.6 0.0, 2.0 -0.91
DBA/2J f 1.29 2.87   14 0.766 2.23 0.0, 11.0 0.19
DBA/2J m 1.15 2.73   13 0.758 2.37 0.0, 10.0 -0.13
FVB/NJ f 0.583 1.16   12 0.336 2.0 0.0, 4.0 -0.51
FVB/NJ m 1.33 1.15   12 0.333 0.866 0.0, 3.0 0.09
MOLF/EiJ f 0.667 0.778   12 0.225 1.17 0.0, 2.0 -0.43
MOLF/EiJ m 1.82 1.33   11 0.4 0.73 0.0, 4.0 0.68
SJL/J f 1.08 0.862   13 0.239 0.801 0.0, 3.0 -0.01
SJL/J m 2.5 2.39   12 0.691 0.957 0.0, 7.0 1.49
SM/J f 0.1 0.316   10 0.1 3.16 0.0, 1.0 -0.99
SM/J m 0.5 0.798   12 0.23 1.6 0.0, 2.0 -0.91
SPRET/EiJ f 1.0 1.41   13 0.392 1.41 0.0, 5.0 -0.09
SPRET/EiJ m 0.833 1.03   12 0.297 1.24 0.0, 3.0 -0.51


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.4167 0.4594 2.3202 0.5132
129S1/SvImJ m 0.9167 0.4594 1.8202 0.0132
A/J f 0.5 0.4594 1.4035 0.0
A/J m 0.3 0.3558 0.9999 0.0
AKR/J f 1.25 0.4594 2.1535 0.3465
AKR/J m 2.4706 0.386 3.2297 1.7115
BALB/cByJ f 3.9545 0.3393 4.6218 3.2873
BALB/cByJ m 1.75 0.4594 2.6535 0.8465
BALB/cJ f 2.2857 0.4253 3.1222 1.4492
BALB/cJ m 2.5833 0.4594 3.4868 1.6798
C3H/HeJ f 0.5263 0.3651 1.2444 0.0
C3H/HeJ m 0.2778 0.3751 1.0155 0.0
C57BL/6J f 0.1667 0.4594 1.0702 0.0
C57BL/6J m 0.6923 0.4414 1.5604 0.0
CAST/EiJ f 0.5 0.5032 1.4897 0.0
CAST/EiJ m 0.5 0.4594 1.4035 0.0
DBA/2J f 1.2857 0.4253 2.1222 0.4492
DBA/2J m 1.1538 0.4414 2.0219 0.2858
FVB/NJ f 0.5833 0.4594 1.4868 0.0
FVB/NJ m 1.3333 0.4594 2.2368 0.4298
MOLF/EiJ f 0.6667 0.4594 1.5702 0.0
MOLF/EiJ m 1.8182 0.4798 2.7619 0.8745
SJL/J f 1.0769 0.4414 1.945 0.2089
SJL/J m 2.5 0.4594 3.4035 1.5965
SM/J f 0.1 0.5032 1.0897 0.0
SM/J m 0.5 0.4594 1.4035 0.0
SPRET/EiJ f 1.0 0.4414 1.8681 0.1319
SPRET/EiJ m 0.8333 0.4594 1.7368 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.1667 0.3248 1.8055 0.5278
A/J both 0.4 0.2905 0.9714 0.0
AKR/J both 1.8603 0.3 2.4503 1.2703
BALB/cByJ both 2.8523 0.2855 3.4139 2.2907
BALB/cJ both 2.4345 0.313 3.0502 1.8189
C3H/HeJ both 0.402 0.2617 0.9168 0.0
C57BL/6J both 0.4295 0.3185 1.056 0.0
CAST/EiJ both 0.5 0.3407 1.1701 0.0
DBA/2J both 1.2198 0.3065 1.8225 0.617
FVB/NJ both 0.9583 0.3248 1.5972 0.3195
MOLF/EiJ both 1.2424 0.3321 1.8957 0.5892
SJL/J both 1.7885 0.3185 2.4149 1.162
SM/J both 0.3 0.3407 0.9701 0.0
SPRET/EiJ both 0.9167 0.3185 1.5431 0.2902




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.