Project measure / variable:   CSNA03   dist_l60_cont_in_d19

ID, description, units MPD:90430   dist_l60_cont_in_d19   distance traveled, last 60 min (post-injection), on successive days, saline control, founders   [cm]  day 19  
Data set, strains CSNA03   inbred w/CC8   9 strains     sex: both     age: 8-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled, last 60 min (post-injection), on successive days, saline control, founders day 19



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means9922.0   cm 6771.0   cm
Median of the strain means7332.0   cm 6832.0   cm
SD of the strain means± 8632.0 ± 5350.0
Coefficient of variation (CV)0.87 0.7901
Min–max range of strain means577.5   –   21042.0   cm 356.1   –   14396.0   cm
Mean sample size per strain6.8   mice 6.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 293294646.7877 293294646.7877 9.1463 0.0031
strain 8 5355645295.7426 669455661.9678 20.8768 < 0.0001
sex:strain 8 453034006.0072 56629250.7509 1.766 0.0923
Residuals 103 3302898647.7945 32066977.1631


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 577.5 944.7   8 334.0 1.6359 -1.08
129S1/SvImJ m 356.1 539.7   8 190.8 1.5155 -1.2
A/J f 2045.0 1145.0   6 467.5 0.5599 560.5, 3736.0 -0.91
A/J m 1301.0 719.4   8 254.3 0.5528 597.9, 2501.0 -1.02
C57BL/6J f 7332.0 1866.0   7 705.3 0.2545 4614.0, 10189.0 -0.3
C57BL/6J m 5723.0 2183.0   6 891.4 0.3815 3159.0, 9185.0 -0.2
CAST/EiJ f 19626.0 3723.0   7 1407.0 0.1897 13170.0, 24804.0 1.12
CAST/EiJ m 14396.0 6186.0   7 2338.0 0.4297 7898.0, 24613.0 1.43
DBA/2J f 4216.0 1513.0   3 873.4 0.3588 2476.0, 5216.0 -0.66
DBA/2J m 6832.0 6150.0   2   4348.0 0.9002 2483.0, 11180.0 0.01
NOD/ShiLtJ f 21042.0 21429.0   5 9583.0 1.0184 226.9, 54885.0 1.29
NOD/ShiLtJ m 7549.0 3799.0   5 1699.0 0.5032 3183.0, 12280.0 0.15
NZO/HlLtJ f 1111.0 721.4   10 228.1 0.6494 194.2, 2780.0 -1.02
NZO/HlLtJ m 676.6 299.9   9 99.96 0.4432 68.71, 917.0 -1.14
PWK/PhJ f 13446.0 3330.0   8 1177.0 0.2477 10090.0, 18623.0 0.41
PWK/PhJ m 10462.0 7704.0   8 2724.0 0.7364 4541.0, 27711.0 0.69
WSB/EiJ f 19904.0 7294.0   7 2757.0 0.3665 11959.0, 32656.0 1.16
WSB/EiJ m 13647.0 5358.0   7 2025.0 0.3926 7048.0, 24383.0 1.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 577.4625 2002.0919422898 4548.1396636832 -3393.2146636832
129S1/SvImJ m 356.08775 2002.0919422898 4326.7649136832 -3614.5894136832
A/J f 2045.3833333333 2311.8166436468 6630.3263919685 -2539.5597253019
A/J m 1301.2375 2002.0919422898 5271.9146636832 -2669.4396636832
C57BL/6J f 7332.4285714286 2140.3263156769 11577.2610114257 3087.5961314315
C57BL/6J m 5723.1666666667 2311.8166436468 10308.1097253019 1138.2236080315
CAST/EiJ f 19626.1428571429 2140.3263156769 23870.97529714 15381.3104171458
CAST/EiJ m 14395.7142857143 2140.3263156769 18640.5467257114 10150.8818457172
DBA/2J f 4216.3333333333 3269.4024511651 10700.4219895636 -2267.7553228969
DBA/2J m 6831.5 4004.1838845796 14772.8543273664 -1109.8543273664
NOD/ShiLtJ f 21041.98 2532.4682490825 26064.5334761824 16019.4265238175
NOD/ShiLtJ m 7549.4 2532.4682490825 12571.9534761824 2526.8465238175
NZO/HlLtJ f 1110.92 1790.7254720658 4662.4016218807 -2440.5616218807
NZO/HlLtJ m 676.6122222222 1887.5903852694 4420.2025533462 -3066.9781089017
PWK/PhJ f 13445.875 2002.0919422898 17416.5521636832 9475.1978363168
PWK/PhJ m 10462.375 2002.0919422898 14433.0521636832 6491.6978363168
WSB/EiJ f 19903.7142857143 2140.3263156769 24148.5467257114 15658.8818457172
WSB/EiJ m 13647.2857142857 2140.3263156769 17892.1181542828 9402.4532742886


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 466.775125 1415.6927889521 3274.467873343 -2340.9176233429
A/J both 1673.3104166667 1529.1229789674 4705.9651938018 -1359.3443604685
C57BL/6J both 6527.7976190476 1575.2375163306 9651.9097046881 3403.6855334072
CAST/EiJ both 17010.9285714286 1513.4392517672 20012.4783747512 14009.378768106
DBA/2J both 5523.9166666667 2584.6895833548 10650.0388427037 397.7944906296
NOD/ShiLtJ both 14295.69 1790.7254720658 17847.1716218806 10744.2083781193
NZO/HlLtJ both 893.7661111111 1300.9318947265 3473.8576927144 -1686.3254704922
PWK/PhJ both 11954.125 1415.6927889521 14761.817748343 9146.432251657
WSB/EiJ both 16775.5 1513.4392517672 19777.0498033226 13773.9501966774




  GWAS USING LINEAR MIXED MODELS