Project measure / variable:   CSNA03   time_wo_gray_in

ID, description, units MPD:90286   time_wo_gray_in   percentage of time spent in novel zone, excluding center gray zone (novelty preference), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 12wks
Procedure conditioned place preference test
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of time spent in novel zone, excluding center gray zone (novelty preference), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means77.42   % 77.77   %
Median of the strain means77.45   % 77.87   %
SD of the strain means± 6.0492 ± 6.5334
Coefficient of variation (CV)0.0781 0.084
Min–max range of strain means68.32   –   86.49   % 66.72   –   86.6   %
Mean sample size per strain40.4   mice 39.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 232.9047 232.9047 1.0475 0.3064
strain 9 24468.9872 2718.7764 12.2273 < 0.0001
sex:strain 9 1604.5229 178.2803 0.8018 0.6147
Residuals 777 172767.8189 222.3524


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 85.38 13.953   42 2.153 0.1634 37.314, 100.0 1.32
129S1/SvImJ m 83.33 22.35   45 3.3318 0.2682 0.89609, 100.0 0.85
A/J f 74.31 17.348   60 2.2397 0.2335 31.73, 100.0 -0.51
A/J m 77.11 20.694   61 2.6497 0.2684 2.9119, 99.97 -0.1
C57BL/6J f 68.32 11.042   58 1.4499 0.1616 46.487, 92.42 -1.5
C57BL/6J m 68.65 13.015   55 1.7549 0.1896 33.071, 100.0 -1.4
C57BL/6NJ f 68.97 18.231   9 6.0769 0.2643 35.966, 95.75 -1.4
C57BL/6NJ m 66.72 12.017   10 3.8 0.1801 45.8, 85.01 -1.69
CAST/EiJ f 76.0 13.569   31 2.4371 0.1785 27.374, 89.8 -0.23
CAST/EiJ m 74.57 15.808   28 2.9874 0.212 12.131, 88.79 -0.49
DBA/2J f 80.81 16.375   24 3.3425 0.2026 12.218, 98.78 0.56
DBA/2J m 76.86 14.396   23 3.0018 0.1873 46.487, 98.19 -0.14
NOD/ShiLtJ f 78.83 15.717   42 2.4252 0.1994 10.006, 95.42 0.23
NOD/ShiLtJ m 78.62 15.152   39 2.4262 0.1927 9.4948, 96.46 0.13
NZO/HlLtJ f 76.08 17.538   44 2.6439 0.2305 25.454, 99.83 -0.22
NZO/HlLtJ m 80.35 9.4904   43 1.4473 0.1181 52.05, 100.0 0.39
PWK/PhJ f 86.49 10.614   43 1.6187 0.1227 26.846, 95.82 1.5
PWK/PhJ m 86.6 7.9793   42 1.2312 0.0921 54.49, 98.22 1.35
WSB/EiJ f 79.01 12.814   51 1.7943 0.1622 42.37, 99.6 0.26
WSB/EiJ m 84.92 10.308   47 1.5036 0.1214 52.29, 100.0 1.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 85.3756190476 2.3008921937 89.8923205402 80.858917555
129S1/SvImJ m 83.334002 2.2228730421 87.6975501986 78.9704538014
A/J f 74.3058666667 1.9250645239 78.0848102573 70.526923076
A/J m 77.1051786885 1.909220102 80.8530193339 73.3573380432
C57BL/6J f 68.3165172414 1.9579739936 72.160062838 64.4729716448
C57BL/6J m 68.6471090909 2.0106643193 72.5940869444 64.7001312374
C57BL/6NJ f 68.9684444444 4.9704952276 78.7256348396 59.2112540493
C57BL/6NJ m 66.717 4.7154258054 75.9734835638 57.4605164362
CAST/EiJ f 75.9979354839 2.6781818897 81.2552648675 70.7406061003
CAST/EiJ m 74.56625 2.8180059139 80.0980569887 69.0344430113
DBA/2J f 80.80825 3.0437942691 86.7832844478 74.8332155522
DBA/2J m 76.8587826087 3.1092596998 82.962327123 70.7552380944
NOD/ShiLtJ f 78.8310952381 2.3008921937 83.3477967307 74.3143937455
NOD/ShiLtJ m 78.622174359 2.3877486729 83.3093770119 73.9349717061
NZO/HlLtJ f 76.0846590909 2.2479910489 80.4975144839 71.6718036979
NZO/HlLtJ m 80.3509302326 2.2739802481 84.8148029897 75.8870574754
PWK/PhJ f 86.4868837209 2.2739802481 90.9507564781 82.0230109637
PWK/PhJ m 86.595952381 2.3008921937 91.1126538735 82.0792508884
WSB/EiJ f 79.0110784314 2.0880256425 83.1099182473 74.9122386154
WSB/EiJ m 84.9227659574 2.1750637323 89.1924634396 80.6530684753


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 84.3548105238 1.599630383 87.4949198075 81.2147012401
A/J both 75.7055226776 1.3556359042 78.3666654849 73.0443798703
C57BL/6J both 68.4818131661 1.4032491907 71.2364218919 65.7272044404
C57BL/6NJ both 67.8427222222 3.4256774269 74.5674016268 61.1180428177
CAST/EiJ both 75.2820927419 1.9438245526 79.0978626776 71.4663228063
DBA/2J both 78.8335163043 2.1755562182 83.1041805469 74.5628520618
NOD/ShiLtJ both 78.7266347985 1.6579692859 81.9812646194 75.4720049777
NZO/HlLtJ both 78.2177946617 1.5987846888 81.3562438294 75.0793454941
PWK/PhJ both 86.5414180509 1.6174896488 89.7165854625 83.3662506394
WSB/EiJ both 81.9669221944 1.5075438073 84.9262635242 79.0075808646




  GWAS USING LINEAR MIXED MODELS