Project measure / variable:   CSNA03   entries_novel_HB_in

ID, description, units MPD:90268   entries_novel_HB_in   number of novel entries (hole board), founders   [n]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-13wks
Procedure hole board test
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  STRAIN COMPARISON PLOT
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CSNA03 - number of novel entries (hole board), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means9.143   n 8.5511   n
Median of the strain means8.7735   n 7.2826   n
SD of the strain means± 2.8193 ± 3.1104
Coefficient of variation (CV)0.3084 0.3637
Min–max range of strain means4.7083   –   12.979   n 3.875   –   12.915   n
Mean sample size per strain40.3   mice 40.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 113.6573 113.6573 10.7804 0.0011
strain 9 6724.7195 747.1911 70.8714 < 0.0001
sex:strain 9 100.4524 11.1614 1.0587 0.3913
Residuals 788 8307.8132 10.5429


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 8.2683 3.7949   41 0.59266 0.459 2.0, 15.0 -0.31
129S1/SvImJ m 7.0889 3.5408   45 0.52783 0.4995 1.0, 15.0 -0.47
A/J f 4.7083 3.2679   48 0.47168 0.6941 1.0, 14.0 -1.57
A/J m 3.875 2.3746   56 0.31732 0.6128 1.0, 10.0 -1.5
C57BL/6J f 9.2787 3.4406   61 0.44052 0.3708 2.0, 16.0 0.05
C57BL/6J m 9.4828 3.1912   58 0.41903 0.3365 1.0, 14.0 0.3
C57BL/6NJ f 6.5833 2.6785   12 0.77321 0.4069 4.0, 11.0 -0.91
C57BL/6NJ m 7.0833 4.3161   12 1.246 0.6093 1.0, 15.0 -0.47
CAST/EiJ f 12.606 2.8388   33 0.49417 0.2252 4.0, 16.0 1.23
CAST/EiJ m 12.167 3.1082   30 0.56748 0.2555 5.0, 16.0 1.16
DBA/2J f 7.625 3.7511   24 0.76569 0.4919 1.0, 16.0 -0.54
DBA/2J m 6.2174 3.3839   23 0.70559 0.5443 1.0, 15.0 -0.75
NOD/ShiLtJ f 9.4286 4.1798   42 0.64495 0.4433 1.0, 16.0 0.1
NOD/ShiLtJ m 7.4762 3.1718   42 0.48942 0.4243 1.0, 14.0 -0.35
NZO/HlLtJ f 7.3256 3.1526   43 0.48077 0.4304 2.0, 15.0 -0.64
NZO/HlLtJ m 6.5116 3.0188   43 0.46036 0.4636 1.0, 13.0 -0.66
PWK/PhJ f 12.979 2.7249   48 0.39331 0.2099 7.0, 16.0 1.36
PWK/PhJ m 12.915 2.6113   47 0.38089 0.2022 7.0, 16.0 1.4
WSB/EiJ f 12.627 3.6494   51 0.51102 0.289 3.0, 16.0 1.24
WSB/EiJ m 12.694 2.9665   49 0.42379 0.2337 3.0, 16.0 1.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 8.2682926829 0.5070938277 9.2637072338 7.272878132
129S1/SvImJ m 7.0888888889 0.4840319125 8.0390333838 6.138744394
A/J f 4.7083333333 0.468661884 5.6283067846 3.788359882
A/J m 3.875 0.4338965922 4.7267299125 3.0232700875
C57BL/6J f 9.2786885246 0.4157338003 10.0947652573 8.4626117919
C57BL/6J m 9.4827586207 0.4263499888 10.319674709 8.6458425324
C57BL/6NJ f 6.5833333333 0.937323768 8.4232802359 4.7433864307
C57BL/6NJ m 7.0833333333 0.937323768 8.9232802359 5.2433864307
CAST/EiJ f 12.6060606061 0.5652274992 13.7155903352 11.4965308769
CAST/EiJ m 12.1666666667 0.5928156024 13.3303512639 11.0029820695
DBA/2J f 7.625 0.6627879925 8.9260389319 6.3239610681
DBA/2J m 6.2173913043 0.6770431286 7.5464127694 4.8883698393
NOD/ShiLtJ f 9.4285714286 0.5010206286 10.4120644171 8.4450784401
NOD/ShiLtJ m 7.4761904762 0.5010206286 8.4596834647 6.4926974877
NZO/HlLtJ f 7.3255813953 0.4951605367 8.2975711461 6.3535916446
NZO/HlLtJ m 6.511627907 0.4951605367 7.4836176578 5.5396381562
PWK/PhJ f 12.9791666667 0.468661884 13.899140118 12.0591932154
PWK/PhJ m 12.914893617 0.4736214071 13.8446025082 11.9851847258
WSB/EiJ f 12.6274509804 0.4546688119 13.5199563245 11.7349456363
WSB/EiJ m 12.693877551 0.4638549684 13.6044151278 11.7833399743


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 7.6785907859 0.350510714 8.3666359678 6.990545604
A/J both 4.2916666667 0.3193392453 4.9185229091 3.6648104242
C57BL/6J both 9.3807235726 0.2977452374 9.9651912305 8.7962559147
C57BL/6NJ both 6.8333333333 0.6627879925 8.1343722652 5.5322944015
CAST/EiJ both 12.3863636364 0.4095462319 13.1902943022 11.5824329706
DBA/2J both 6.9211956522 0.4737286462 7.8511150515 5.9912762529
NOD/ShiLtJ both 8.4523809524 0.354275084 9.1478155138 7.756946391
NZO/HlLtJ both 6.9186046512 0.3501313732 7.6059051952 6.2313041071
PWK/PhJ both 12.9470301418 0.3331520669 13.6010006636 12.29305962
WSB/EiJ both 12.6606642657 0.3247634371 13.2981680829 12.0231604485




  GWAS USING LINEAR MIXED MODELS