Project measure / variable:   CSNA03   pct_amb_counts_light_LD_in

ID, description, units MPD:90223   pct_amb_counts_light_LD_in   percentage of ambulatory counts in light, 20 min test (LD box), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of ambulatory counts in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means37.91   % 37.201   %
Median of the strain means39.999   % 38.576   %
SD of the strain means± 8.774 ± 10.288
Coefficient of variation (CV)0.2314 0.2766
Min–max range of strain means17.409   –   46.991   % 20.155   –   49.766   %
Mean sample size per strain43.4   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 620.3274 620.3274 1.841 0.1752
strain 9 65954.6648 7328.2961 21.7484 < 0.0001
sex:strain 9 5123.6316 569.2924 1.6895 0.0874
Residuals 839 282707.7871 336.958


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 34.4 36.232   48 5.2297 1.0533 -0.4
129S1/SvImJ m 32.418 33.72   49 4.8171 1.0401 -0.46
A/J f 31.901 35.433   60 4.5743 1.1107 -0.68
A/J m 20.155 27.754   61 3.5535 1.377 -1.66
C57BL/6J f 41.903 13.208   60 1.7051 0.3152 21.533, 100.0 0.46
C57BL/6J m 38.842 6.0403   59 0.78638 0.1555 26.68, 57.98 0.16
C57BL/6NJ f 45.116 13.11   13 3.6359 0.2906 25.505, 76.56 0.82
C57BL/6NJ m 49.766 15.099   13 4.1876 0.3034 34.872, 87.29 1.22
CAST/EiJ f 45.569 6.3321   33 1.1023 0.139 27.024, 65.09 0.87
CAST/EiJ m 44.138 9.1997   30 1.6796 0.2084 3.252, 61.33 0.67
DBA/2J f 35.812 6.261   24 1.278 0.1748 19.546, 49.44 -0.24
DBA/2J m 35.569 8.0022   24 1.6334 0.225 20.745, 54.37 -0.16
NOD/ShiLtJ f 46.991 11.187   47 1.6318 0.2381 1.3473, 68.69 1.03
NOD/ShiLtJ m 49.754 8.2883   44 1.2495 0.1666 32.101, 78.36 1.22
NZO/HlLtJ f 17.409 8.8299   47 1.288 0.5072 1.0466, 47.469 -2.34
NZO/HlLtJ m 21.411 7.8072   46 1.1511 0.3646 0.69204, 34.795 -1.53
PWK/PhJ f 41.001 6.3297   47 0.92329 0.1544 29.53, 53.38 0.35
PWK/PhJ m 38.311 5.1285   48 0.74024 0.1339 20.0, 45.388 0.11
WSB/EiJ f 38.997 5.8387   55 0.78729 0.1497 24.275, 56.13 0.12
WSB/EiJ m 41.643 7.5664   51 1.0595 0.1817 21.466, 66.2 0.43


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 34.4001833333 2.6495205144 39.6006502684 29.1997163983
129S1/SvImJ m 32.4184220408 2.6223452267 37.5655494434 27.2712946382
A/J f 31.9012996667 2.3698031912 36.5527386993 27.2498606341
A/J m 20.1550331148 2.3502983065 24.7681880475 15.541878182
C57BL/6J f 41.9034166667 2.3698031912 46.5548556993 37.2519776341
C57BL/6J m 38.8416440678 2.3898018849 43.5323364464 34.1509516892
C57BL/6NJ f 45.1157692308 5.0911539413 55.1086632615 35.1228752
C57BL/6NJ m 49.7659230769 5.0911539413 59.7588171077 39.7730290462
CAST/EiJ f 45.569030303 3.1954419712 51.8410294151 39.297031191
CAST/EiJ m 44.1377333333 3.3514078132 50.7158614978 37.5596051689
DBA/2J f 35.8120833333 3.7469878453 43.1666542035 28.4575124631
DBA/2J m 35.56875 3.7469878453 42.9233208702 28.2141791298
NOD/ShiLtJ f 46.9911553191 2.6775585494 52.2466551829 41.7356554554
NOD/ShiLtJ m 49.7541363636 2.7673339233 55.1858469272 44.3224258001
NZO/HlLtJ f 17.4086787234 2.6775585494 22.6641785871 12.1531788597
NZO/HlLtJ m 21.4105182609 2.7065059695 26.7228359906 16.0982005311
PWK/PhJ f 41.0007021277 2.6775585494 46.2562019914 35.7452022639
PWK/PhJ m 38.3107291667 2.6495205144 43.5111961017 33.1102622316
WSB/EiJ f 38.9974 2.4751787076 43.8556696217 34.1391303783
WSB/EiJ m 41.6430392157 2.5704124561 46.68823321 36.5978452214


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 33.4093026871 1.8639107707 37.0677783546 29.7508270195
A/J both 26.0281663907 1.6688221366 29.3037229658 22.7526098156
C57BL/6J both 40.3725303672 1.682789367 43.6755017592 37.0695589753
C57BL/6NJ both 47.4408461538 3.599989476 54.5068892867 40.374803021
CAST/EiJ both 44.8533818182 2.3153176737 49.3978769224 40.308886714
DBA/2J both 35.6904166667 2.6495205144 40.8908836017 30.4899497316
NOD/ShiLtJ both 48.3726458414 1.9253218451 52.1516588893 44.5936327935
NZO/HlLtJ both 19.4095984921 1.9035817784 23.145940235 15.6732567492
PWK/PhJ both 39.6557156472 1.8834329522 43.3525093647 35.9589219296
WSB/EiJ both 40.3202196078 1.7842035919 43.8222463838 36.8181928319




  GWAS USING LINEAR MIXED MODELS