Project measure / variable:   CSNA03   amb_counts_tot_LD_in

ID, description, units MPD:90214   amb_counts_tot_LD_in   total ambulatory counts, 20 min test (LD box), founders   [n]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
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  STRAIN COMPARISON PLOT
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CSNA03 - total ambulatory counts, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means2219.0   n 1951.0   n
Median of the strain means1966.0   n 1934.0   n
SD of the strain means± 1214.0 ± 1064.0
Coefficient of variation (CV)0.5471 0.5456
Min–max range of strain means487.6   –   3713.0   n 541.7   –   3245.0   n
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 17731804.8097 17731804.8097 11.1635 0.0009
strain 9 1084607717.0651 120511968.5628 75.8716 < 0.0001
sex:strain 9 18799999.9765 2088888.8863 1.3151 0.2247
Residuals 840 1334227669.0917 1588366.2727


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 487.6 891.6   49 127.4 1.8285 -1.43
129S1/SvImJ m 551.6 756.5   49 108.1 1.3715 3.0, 4301.0 -1.31
A/J f 712.0 965.9   60 124.7 1.3566 27.0, 5491.0 -1.24
A/J m 541.7 554.1   61 70.95 1.0229 41.0, 2583.0 -1.32
C57BL/6J f 1995.0 496.4   60 64.08 0.2488 613.0, 3546.0 -0.18
C57BL/6J m 2049.0 919.5   59 119.7 0.4487 1141.0, 8119.0 0.09
C57BL/6NJ f 1735.0 429.7   13 119.2 0.2477 948.0, 2616.0 -0.4
C57BL/6NJ m 1502.0 317.6   13 88.09 0.2115 670.0, 1923.0 -0.42
CAST/EiJ f 3713.0 2117.0   33 368.5 0.5702 1062.0, 14498.0 1.23
CAST/EiJ m 3245.0 1907.0   30 348.1 0.5876 123.0, 11105.0 1.22
DBA/2J f 1938.0 483.0   24 98.59 0.2492 1163.0, 2916.0 -0.23
DBA/2J m 1820.0 429.6   24 87.69 0.2361 1034.0, 2592.0 -0.12
NOD/ShiLtJ f 3656.0 2067.0   47 301.5 0.5654 1336.0, 13228.0 1.18
NOD/ShiLtJ m 3220.0 713.8   44 107.6 0.2217 2313.0, 5975.0 1.19
NZO/HlLtJ f 1292.0 564.5   47 82.34 0.4368 520.0, 2832.0 -0.76
NZO/HlLtJ m 982.1 304.9   46 44.951 0.3104 469.0, 1896.0 -0.91
PWK/PhJ f 3307.0 2605.0   47 379.9 0.7875 1468.0, 12988.0 0.9
PWK/PhJ m 2369.0 969.3   48 139.9 0.4091 20.0, 5907.0 0.39
WSB/EiJ f 3356.0 1151.0   55 155.2 0.3429 1918.0, 8910.0 0.94
WSB/EiJ m 3225.0 2023.0   51 283.3 0.6273 1723.0, 14223.0 1.2


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 487.6326530612 180.0434342567 841.0204873323 134.2448187902
129S1/SvImJ m 551.5714285714 180.0434342567 904.9592628425 198.1835943004
A/J f 711.9833333333 162.7045519097 1031.3385459396 392.6281207271
A/J m 541.7213114754 161.3653970224 858.4480414196 224.9945815313
C57BL/6J f 1995.0166666667 162.7045519097 2314.3718792729 1675.6614540604
C57BL/6J m 2049.2711864407 164.0776104459 2371.321427524 1727.2209453574
C57BL/6NJ f 1734.8461538462 349.5454490894 2420.9312073943 1048.761100298
C57BL/6NJ m 1502.0 349.5454490894 2188.0850535481 815.9149464519
CAST/EiJ f 3713.2424242424 219.3907730393 4143.8609050745 3282.6239434103
CAST/EiJ m 3245.1 230.0989839705 3696.7364728823 2793.4635271177
DBA/2J f 1937.75 257.2584848559 2442.6949272415 1432.8050727584
DBA/2J m 1819.5416666667 257.2584848559 2324.4865939082 1314.5967394251
NOD/ShiLtJ f 3655.8723404255 183.8342380497 4016.7007345154 3295.0439463357
NOD/ShiLtJ m 3219.8409090909 189.997982808 3592.7674528306 2846.9143653512
NZO/HlLtJ f 1292.2553191489 183.8342380497 1653.0837132387 931.4269250591
NZO/HlLtJ m 982.1086956522 185.8216929776 1346.838050616 617.3793406883
PWK/PhJ f 3307.4042553191 183.8342380497 3668.232649409 2946.5758612293
PWK/PhJ m 2369.3125 181.9092191594 2726.3624821782 2012.2625178217
WSB/EiJ f 3355.8545454545 169.9393620586 3689.4101864209 3022.2989044882
WSB/EiJ m 3225.0392156863 176.4778646748 3571.4285780735 2878.649853299


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 519.6020408163 127.309933271 769.4849748182 269.7191068145
A/J both 626.8523224044 114.5770074757 851.7431699726 401.9614748361
C57BL/6J both 2022.1439265537 115.5359613516 2248.9170012344 1795.3708518729
C57BL/6NJ both 1618.4230769231 247.165957384 2103.5584707577 1133.2876830885
CAST/EiJ both 3479.1712121212 158.9637173375 3791.1839441017 3167.1584801407
DBA/2J both 1878.6458333333 181.9092191594 2235.6958155116 1521.5958511551
NOD/ShiLtJ both 3437.8566247582 132.1876134046 3697.3134308971 3178.3998186194
NZO/HlLtJ both 1137.1820074005 130.6949967103 1393.7091172514 880.6548975497
PWK/PhJ both 2838.3583776596 129.3116304654 3092.170227144 2584.5465281751
WSB/EiJ both 3290.4468805704 122.4987994809 3530.886559074 3050.0072020669




  GWAS USING LINEAR MIXED MODELS