Project measure / variable:   CSNA03   time_light_LD_in

ID, description, units MPD:90205   time_light_LD_in   time in light, 20 min test (LD box), founders   [s]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
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  STRAIN COMPARISON PLOT
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CSNA03 - time in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means447.7   s 442.9   s
Median of the strain means467.0   s 457.1   s
SD of the strain means± 105.9 ± 136.4
Coefficient of variation (CV)0.2365 0.3079
Min–max range of strain means215.5   –   581.1   s 229.6   –   639.1   s
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 102824.2018 102824.2018 1.661 0.1978
strain 9 10418618.1095 1157624.2344 18.7002 < 0.0001
sex:strain 9 666681.2054 74075.6895 1.1966 0.2936
Residuals 840 51999623.4132 61904.3136


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 406.3 496.2   49 70.89 1.2212 1.08, 1200.0 -0.39
129S1/SvImJ m 348.9 472.4   49 67.49 1.3541 0.52, 1914.0 -0.69
A/J f 374.4 437.4   60 56.47 1.1683 0.5, 1200.0 -0.69
A/J m 250.2 357.0   61 45.714 1.4272 1.4, 1200.0 -1.41
C57BL/6J f 503.8 188.3   60 24.311 0.3738 79.36, 1200.0 0.53
C57BL/6J m 494.3 110.8   59 14.42 0.2241 275.2, 799.8 0.38
C57BL/6NJ f 520.8 186.7   13 51.78 0.3585 220.0, 956.6 0.69
C57BL/6NJ m 639.1 212.3   13 58.88 0.3322 325.4, 1083.0 1.44
CAST/EiJ f 546.6 108.7   33 18.917 0.1988 189.0, 922.0 0.93
CAST/EiJ m 533.0 141.9   30 25.912 0.2663 2.12, 905.9 0.66
DBA/2J f 394.2 71.17   24 14.528 0.1806 202.6, 506.4 -0.5
DBA/2J m 422.2 124.9   24 25.493 0.2958 223.5, 679.1 -0.15
NOD/ShiLtJ f 581.1 134.9   47 19.673 0.2321 27.16, 844.2 1.26
NOD/ShiLtJ m 597.7 91.5   44 13.795 0.1531 440.6, 942.3 1.13
NZO/HlLtJ f 215.5 116.3   47 16.964 0.5396 16.52, 577.7 -2.19
NZO/HlLtJ m 229.6 105.4   46 15.54 0.459 14.8, 469.6 -1.56
PWK/PhJ f 476.6 134.6   47 19.629 0.2823 285.9, 944.6 0.27
PWK/PhJ m 426.2 96.41   48 13.916 0.2262 2.76, 659.4 -0.12
WSB/EiJ f 457.3 111.7   55 15.058 0.2442 276.6, 873.5 0.09
WSB/EiJ m 488.1 146.1   51 20.463 0.2994 199.7, 1008.0 0.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 406.3336734694 35.5436821181 476.0985326968 336.568814242
129S1/SvImJ m 348.8920408163 35.5436821181 418.6569000438 279.1271815889
A/J f 374.413 32.1206874115 437.4592321856 311.3667678144
A/J m 250.1704918033 31.8563151181 312.6978161343 187.6431674722
C57BL/6J f 503.836 32.1206874115 566.8822321856 440.7897678144
C57BL/6J m 494.2847457627 32.3917528704 557.8630230956 430.7064684299
C57BL/6NJ f 520.7923076923 69.0063060592 656.2373415531 385.3472738315
C57BL/6NJ m 639.1307692308 69.0063060592 774.5758030916 503.68573537
CAST/EiJ f 546.6242424242 43.3115260701 631.635764561 461.6127202875
CAST/EiJ m 533.0306666667 45.4255117701 622.1915032801 443.8698300532
DBA/2J f 394.1625 50.7872661153 493.8473457992 294.4776542008
DBA/2J m 422.1833333333 50.7872661153 521.8681791325 322.4984875342
NOD/ShiLtJ f 581.0587234043 36.2920522297 652.2924775907 509.8249692178
NOD/ShiLtJ m 597.6863636364 37.5088818534 671.3085014212 524.0642258516
NZO/HlLtJ f 215.5461702128 36.2920522297 286.7799243992 144.3124160263
NZO/HlLtJ m 229.6186956522 36.6844101431 301.6225668597 157.6148244446
PWK/PhJ f 476.6191489362 36.2920522297 547.8529031226 405.3853947497
PWK/PhJ m 426.1970833333 35.9120202681 496.6849137795 355.7092528872
WSB/EiJ f 457.2909090909 33.5489638337 523.1405509852 391.4412671966
WSB/EiJ m 488.0764705882 34.8397771281 556.4597106471 419.6932305294


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 377.6128571429 25.1331786541 426.9440621911 328.2816520946
A/J both 312.2917459016 22.6194792861 356.6890816348 267.8944101685
C57BL/6J both 499.0603728814 22.8087933362 543.8292927405 454.2914530222
C57BL/6NJ both 579.9615384615 48.7948269591 675.7356403825 484.1874365405
CAST/EiJ both 539.8274545455 31.3821820867 601.424154298 478.2307547929
DBA/2J both 408.1729166667 35.9120202681 478.6607471128 337.6850862205
NOD/ShiLtJ both 589.3725435203 26.0961169187 640.5937962078 538.1512908328
NZO/HlLtJ both 222.5824329325 25.8014486153 273.2253129956 171.9395528693
PWK/PhJ both 451.4081161348 25.5283482367 501.5149569264 401.3012753431
WSB/EiJ both 472.6836898396 24.1833777865 520.150633228 425.2167464512




  GWAS USING LINEAR MIXED MODELS