Project measure / variable:   CSNA03   time_tot_LD_in

ID, description, units MPD:90202   time_tot_LD_in   total time, 20 min test (LD box), founders   [s]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
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  STRAIN COMPARISON PLOT
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CSNA03 - total time, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1208.0   s 1207.0   s
Median of the strain means1200.0   s 1200.0   s
SD of the strain means± 19.905 ± 21.906
Coefficient of variation (CV)0.0165 0.0181
Min–max range of strain means1184.0   –   1246.0   s 1180.0   –   1247.0   s
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 188.7315 188.7315 0.0176 0.8945
strain 9 372406.4867 41378.4985 3.8581 < 0.0001
sex:strain 9 13555.3035 1506.1448 0.1404 0.9985
Residuals 840 9009165.0817 10725.1965


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1215.0 102.9   49 14.694 0.0847 1200.0, 1920.0 0.35
129S1/SvImJ m 1215.0 102.9   49 14.694 0.0847 1200.0, 1920.0 0.36
A/J f 1184.0 60.37   60 7.794 0.051 960.0, 1200.0 -1.21
A/J m 1180.0 66.38   61 8.4993 0.0562 960.0, 1200.0 -1.24
C57BL/6J f 1192.0 43.445   60 5.6087 0.0364 960.0, 1200.0 -0.8
C57BL/6J m 1192.0 43.805   59 5.7029 0.0368 960.0, 1200.0 -0.69
C57BL/6NJ f 1200.0 0.0   13 0.0 0.0 1200.0, 1200.0 -0.4
C57BL/6NJ m 1200.0 0.0   13 0.0 0.0 1200.0, 1200.0 -0.32
CAST/EiJ f 1200.0 0.0   33 0.0 0.0 1200.0, 1200.0 -0.4
CAST/EiJ m 1200.0 0.0   30 0.0 0.0 1200.0, 1200.0 -0.32
DBA/2J f 1200.0 0.0   24 0.0 0.0 1200.0, 1200.0 -0.4
DBA/2J m 1200.0 0.0   24 0.0 0.0 1200.0, 1200.0 -0.32
NOD/ShiLtJ f 1190.0 48.967   47 7.1426 0.0412 960.0, 1200.0 -0.9
NOD/ShiLtJ m 1184.0 61.19   44 9.2252 0.0517 960.0, 1200.0 -1.05
NZO/HlLtJ f 1246.0 177.9   47 25.95 0.1428 1200.0, 1920.0 1.91
NZO/HlLtJ m 1247.0 179.7   46 26.501 0.1441 1200.0, 1920.0 1.82
PWK/PhJ f 1231.0 146.9   47 21.428 0.1194 1200.0, 1920.0 1.16
PWK/PhJ m 1215.0 103.9   48 15.0 0.0855 1200.0, 1920.0 0.36
WSB/EiJ f 1222.0 140.7   55 18.977 0.1152 960.0, 1921.0 0.7
WSB/EiJ m 1238.0 175.5   51 24.579 0.1418 960.0, 1920.0 1.41


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1214.693877551 14.7946463882 1243.7326929208 1185.6550621812
129S1/SvImJ m 1214.693877551 14.7946463882 1243.7326929208 1185.6550621812
A/J f 1184.0 13.3698644507 1210.2422646082 1157.7577353918
A/J m 1180.3278688525 13.2598225428 1206.3541440708 1154.3015936342
C57BL/6J f 1192.0 13.3698644507 1218.2422646082 1165.7577353918
C57BL/6J m 1191.8644067797 13.4826923114 1218.3281290239 1165.4006845355
C57BL/6NJ f 1200.0 28.7230763911 1256.3774280433 1143.6225719567
C57BL/6NJ m 1200.0 28.7230763911 1256.3774280433 1143.6225719567
CAST/EiJ f 1200.0 18.0279215476 1235.3850623792 1164.6149376208
CAST/EiJ m 1200.0 18.9078436333 1237.1121665163 1162.8878334837
DBA/2J f 1200.0 21.139611836 1241.4926635614 1158.5073364386
DBA/2J m 1200.0 21.139611836 1241.4926635614 1158.5073364386
NOD/ShiLtJ f 1189.7872340426 15.1061467874 1219.4374599417 1160.1370081434
NOD/ShiLtJ m 1183.6363636364 15.6126380377 1214.2807265712 1152.9920007015
NZO/HlLtJ f 1245.9574468085 15.1061467874 1275.6076727077 1216.3072209093
NZO/HlLtJ m 1246.9565217391 15.2694612287 1276.927299937 1216.9857435413
PWK/PhJ f 1230.6382978723 15.1061467874 1260.2885237715 1200.9880719732
PWK/PhJ m 1215.0 14.9479628809 1244.3397437737 1185.6602562263
WSB/EiJ f 1221.8363636364 13.9643679842 1249.2455150962 1194.4272121766
WSB/EiJ m 1237.6470588235 14.5016540813 1266.1107912018 1209.1833264452


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1214.693877551 10.4613947863 1235.2274208166 1194.1603342854
A/J both 1182.1639344262 9.4150965117 1200.6438116817 1163.6840571708
C57BL/6J both 1191.9322033898 9.4938962944 1210.5667482379 1173.2976585417
C57BL/6NJ both 1200.0 20.3102820927 1239.8648616752 1160.1351383248
CAST/EiJ both 1200.0 13.0624701549 1225.6389135062 1174.3610864938
DBA/2J both 1200.0 14.9479628809 1229.3397437738 1170.6602562263
NOD/ShiLtJ both 1186.7117988395 10.8622066964 1208.0320525642 1165.3915451147
NZO/HlLtJ both 1246.4569842738 10.7395544248 1267.5364970864 1225.3774714613
PWK/PhJ both 1222.8191489362 10.6258795524 1243.6755416047 1201.9627562676
WSB/EiJ both 1229.7417112299 10.0660511658 1249.499277152 1209.9841453079




  GWAS USING LINEAR MIXED MODELS