Project measure / variable:   CSNA03   pct_jump_time_light_LD_in

ID, description, units MPD:90187   pct_jump_time_light_LD_in   percentage of time jumping in light, 20 min test (LD box), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of time jumping in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means37.846   % 37.656   %
Median of the strain means40.023   % 39.734   %
SD of the strain means± 7.6099 ± 10.853
Coefficient of variation (CV)0.2011 0.2882
Min–max range of strain means26.537   –   49.355   % 17.465   –   51.87   %
Mean sample size per strain42.7   mice 41.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 447.3197 447.3197 1.3546 0.2448
strain 9 63978.9218 7108.7691 21.5274 < 0.0001
sex:strain 9 4685.3727 520.597 1.5765 0.1179
Residuals 823 271771.058 330.22


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 31.042 32.841   43 5.0082 1.0579 -0.89
129S1/SvImJ m 30.089 29.858   43 4.5533 0.9923 -0.7
A/J f 29.317 35.865   58 4.7093 1.2234 -1.12
A/J m 17.465 25.32   59 3.2964 1.4498 -1.86
C57BL/6J f 42.887 14.338   60 1.851 0.3343 22.175, 100.0 0.66
C57BL/6J m 42.591 8.9152   59 1.1607 0.2093 26.318, 76.28 0.45
C57BL/6NJ f 43.091 14.396   13 3.9929 0.3341 20.408, 75.1 0.69
C57BL/6NJ m 51.6 14.66   13 4.066 0.2841 30.283, 84.69 1.28
CAST/EiJ f 44.379 7.0005   33 1.2186 0.1577 27.743, 65.93 0.86
CAST/EiJ m 43.035 9.2385   30 1.6867 0.2147 4.0, 53.62 0.5
DBA/2J f 31.803 5.859   24 1.196 0.1842 19.2, 43.235 -0.79
DBA/2J m 33.415 13.037   24 2.6612 0.3902 13.243, 56.4 -0.39
NOD/ShiLtJ f 49.355 11.426   47 1.6667 0.2315 2.3742, 69.17 1.51
NOD/ShiLtJ m 51.87 7.3981   44 1.1153 0.1426 41.856, 75.57 1.31
NZO/HlLtJ f 26.537 16.692   47 2.4347 0.629 3.4146, 100.0 -1.49
NZO/HlLtJ m 27.027 12.724   46 1.876 0.4708 0.68415, 52.18 -0.98
PWK/PhJ f 40.339 12.354   47 1.802 0.3062 22.319, 100.0 0.33
PWK/PhJ m 38.032 8.693   48 1.2547 0.2286 0.03
WSB/EiJ f 39.708 6.8507   55 0.92375 0.1725 24.361, 60.49 0.24
WSB/EiJ m 41.437 11.438   50 1.6176 0.276 24.353, 100.0 0.35


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 31.0424302326 2.7711973636 36.4818767077 25.6029837574
129S1/SvImJ m 30.0889439535 2.7711973636 35.5283904286 24.6494974783
A/J f 29.3168732759 2.3860947664 34.0004208778 24.6333256739
A/J m 17.4645305085 2.3657872076 22.108217406 12.820843611
C57BL/6J f 42.88745 2.3459894771 47.4922769097 38.2826230903
C57BL/6J m 42.5911016949 2.3657872076 47.2347885924 37.9474147974
C57BL/6NJ f 43.0905384615 5.0399938766 52.9832935888 33.1977833343
C57BL/6NJ m 51.5973846154 5.0399938766 61.4901397427 41.7046294881
CAST/EiJ f 44.3792727273 3.1633315656 50.5884200657 38.1701253889
CAST/EiJ m 43.0351333333 3.3177301357 49.5473420014 36.5229246652
DBA/2J f 31.8025416667 3.7093350572 39.0834122994 24.5216710339
DBA/2J m 33.4154583333 3.7093350572 40.6963289661 26.1345877006
NOD/ShiLtJ f 49.3550893617 2.6506522585 54.5579238022 44.1522549212
NOD/ShiLtJ m 51.8698863636 2.7395254964 57.2471656945 46.4926070327
NZO/HlLtJ f 26.5366893617 2.6506522585 31.7395238022 21.3338549212
NZO/HlLtJ m 27.027381087 2.6793087914 32.286464021 21.768298153
PWK/PhJ f 40.3393617021 2.6506522585 45.5421961426 35.1365272616
PWK/PhJ m 38.03225 2.6228959726 43.1806029974 32.8838970026
WSB/EiJ f 39.7084 2.4503060944 44.5179848471 34.8988151529
WSB/EiJ m 41.43684 2.5699027125 46.4811751437 36.3925048563


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 30.565687093 1.9595324478 34.4119565815 26.7194176045
A/J both 23.3907018922 1.6800593253 26.6884073877 20.0929963966
C57BL/6J both 42.7392758475 1.6658793277 46.0091481259 39.469403569
C57BL/6NJ both 47.3439615385 3.5638138473 54.3391957736 40.3487273033
CAST/EiJ both 43.7072030303 2.2920514745 48.206157698 39.2082483626
DBA/2J both 32.609 2.6228959726 37.7573529974 27.4606470026
NOD/ShiLtJ both 50.6124878627 1.9059746418 54.3536313783 46.8713443471
NZO/HlLtJ both 26.7820352243 1.8844530371 30.4809350446 23.0831354041
PWK/PhJ both 39.1858058511 1.8645066827 42.8455539572 35.526057745
WSB/EiJ both 40.57262 1.7754154379 44.0574953006 37.0877446994




  GWAS USING LINEAR MIXED MODELS