Project measure / variable:   CSNA03   amb_time_light_LD_in

ID, description, units MPD:90145   amb_time_light_LD_in   ambulatory time in light, 20 min test (LD box), founders   [s]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
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  STRAIN COMPARISON PLOT
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CSNA03 - ambulatory time in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means39.495   s 36.073   s
Median of the strain means34.209   s 34.567   s
SD of the strain means± 25.799 ± 23.02
Coefficient of variation (CV)0.6532 0.6381
Min–max range of strain means6.8765   –   78.0   s 6.4248   –   72.39   s
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4068.313 4068.313 7.3459 0.0069
strain 9 492517.907 54724.2119 98.8125 < 0.0001
sex:strain 9 7178.3008 797.589 1.4402 0.1664
Residuals 840 465207.7531 553.8188


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 6.8765 13.574   49 1.9392 1.974 -1.26
129S1/SvImJ m 8.9273 14.046   49 2.0066 1.5734 -1.18
A/J f 10.035 20.107   60 2.5958 2.0036 -1.14
A/J m 6.4248 10.252   61 1.3126 1.5957 -1.29
C57BL/6J f 36.378 13.528   60 1.7465 0.3719 7.24, 97.36 -0.12
C57BL/6J m 35.457 15.661   59 2.0389 0.4417 18.48, 132.0 -0.03
C57BL/6NJ f 32.04 10.746   13 2.9805 0.3354 16.84, 55.0 -0.29
C57BL/6NJ m 33.677 10.377   13 2.8779 0.3081 10.68, 50.28 -0.1
CAST/EiJ f 72.09 40.94   33 7.1268 0.5679 17.56, 275.0 1.26
CAST/EiJ m 63.65 37.907   30 6.9208 0.5956 0.08, 230.6 1.2
DBA/2J f 31.33 10.8   24 2.2045 0.3447 13.52, 60.72 -0.32
DBA/2J m 30.785 10.757   24 2.1958 0.3494 14.48, 45.0 -0.23
NOD/ShiLtJ f 78.0 43.775   47 6.3853 0.5612 0.88, 262.6 1.49
NOD/ShiLtJ m 72.39 19.518   44 2.9425 0.2696 44.64, 133.4 1.58
NZO/HlLtJ f 12.747 10.321   47 1.5055 0.8097 0.6, 63.08 -1.04
NZO/HlLtJ m 12.562 7.0603   46 1.041 0.562 0.08, 31.52 -1.02
PWK/PhJ f 56.89 41.417   47 6.0413 0.728 21.68, 211.6 0.67
PWK/PhJ m 38.896 12.753   48 1.8408 0.3279 0.08, 83.35 0.12
WSB/EiJ f 58.56 24.015   55 3.2382 0.4101 28.48, 196.0 0.74
WSB/EiJ m 57.96 34.356   51 4.8108 0.5928 27.35, 269.0 0.95


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 6.8765306122 3.361907724 13.4752566058 0.2778046187
129S1/SvImJ m 8.9273469388 3.361907724 15.5260729323 2.3286209452
A/J f 10.0353333333 3.0381429462 15.9985763718 4.0720902949
A/J m 6.4247540984 3.0131372292 12.3389161126 0.5105920842
C57BL/6J f 36.3776666667 3.0381429462 42.3409097051 30.4144236282
C57BL/6J m 35.4572881356 3.0637817378 41.4708547923 29.4437214789
C57BL/6NJ f 32.04 6.5269780596 44.8511011121 19.2288988879
C57BL/6NJ m 33.6769230769 6.5269780596 46.488024189 20.8658219649
CAST/EiJ f 72.0915151515 4.0966311129 80.1323504242 64.0506798788
CAST/EiJ m 63.6453333333 4.2965829589 72.0786325141 55.2120341526
DBA/2J f 31.33 4.8037257835 40.7587151213 21.9012848787
DBA/2J m 30.785 4.8037257835 40.2137151213 21.3562848787
NOD/ShiLtJ f 78.0006382979 3.432692491 84.7383000745 71.2629765213
NOD/ShiLtJ m 72.3868181818 3.5477866137 79.3503857957 65.423250568
NZO/HlLtJ f 12.7470212766 3.432692491 19.4846830532 6.0093595
NZO/HlLtJ m 12.562173913 3.4698037586 19.3726773934 5.7516704327
PWK/PhJ f 56.8927659574 3.432692491 63.630427734 50.1551041808
PWK/PhJ m 38.895625 3.3967470765 45.5627334002 32.2285165998
WSB/EiJ f 58.556 3.1732368152 64.7844042202 52.3275957798
WSB/EiJ m 57.9594117647 3.2953287012 64.4274569768 51.4913665526


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 7.9019387755 2.3772277493 12.5679426727 3.2359348783
A/J both 8.2300437158 2.1394688899 12.4293763969 4.0307110348
C57BL/6J both 35.9174774011 2.1573752049 40.1519564562 31.6829983461
C57BL/6NJ both 32.8584615385 4.6152704466 41.9172780093 23.7996450677
CAST/EiJ both 67.8684242424 2.9682912424 73.694562907 62.0422855779
DBA/2J both 31.0575 3.3967470765 37.7246084002 24.3903915998
NOD/ShiLtJ both 75.1937282398 2.4683074968 80.0385027477 70.348953732
NZO/HlLtJ both 12.6545975948 2.4404362244 17.4446665889 7.8645286008
PWK/PhJ both 47.8941954787 2.4146049594 52.6335630693 43.1548278881
WSB/EiJ both 58.2577058824 2.2873906058 62.747378142 53.7680336227




  GWAS USING LINEAR MIXED MODELS