Project measure / variable:   CSNA03   dist_light_LD_in

ID, description, units MPD:90133   dist_light_LD_in   distance traveled in light, 20 min test (LD box), founders   [cm]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means2426.0   cm 2251.0   cm
Median of the strain means2266.0   cm 2330.0   cm
SD of the strain means± 1487.0 ± 1347.0
Coefficient of variation (CV)0.6132 0.5986
Min–max range of strain means466.5   –   4460.0   cm 457.2   –   4050.0   cm
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 10793752.6332 10793752.6332 3.1467 0.0764
strain 9 1633067887.8478 181451987.5386 52.8994 < 0.0001
sex:strain 9 36699994.6196 4077777.18 1.1888 0.2986
Residuals 840 2881311348.3036 3430132.5575


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 466.5 906.3   49 129.5 1.9427 -1.32
129S1/SvImJ m 627.3 1001.0   49 143.0 1.5957 -1.2
A/J f 744.8 1513.0   60 195.4 2.0319 -1.13
A/J m 457.2 666.3   61 85.31 1.4574 -1.33
C57BL/6J f 2299.0 727.7   60 93.95 0.3165 425.4, 4852.0 -0.09
C57BL/6J m 2328.0 1044.0   59 135.9 0.4484 1193.0, 9180.0 0.06
C57BL/6NJ f 2234.0 730.9   13 202.7 0.3272 1155.0, 3875.0 -0.13
C57BL/6NJ m 2332.0 685.9   13 190.2 0.2941 846.6, 3472.0 0.06
CAST/EiJ f 4460.0 3840.0   33 668.5 0.8611 859.2, 24903.0 1.37
CAST/EiJ m 4033.0 3369.0   30 615.1 0.8354 13.755, 20003.0 1.32
DBA/2J f 1909.0 641.8   24 131.0 0.3361 771.1, 3577.0 -0.35
DBA/2J m 1861.0 662.1   24 135.2 0.3558 880.4, 2824.0 -0.29
NOD/ShiLtJ f 4304.0 2478.0   47 361.4 0.5756 45.85, 13067.0 1.26
NOD/ShiLtJ m 4050.0 939.6   44 141.7 0.232 2743.0, 7681.0 1.34
NZO/HlLtJ f 769.2 550.5   47 80.3 0.7157 47.363, 3375.0 -1.11
NZO/HlLtJ m 785.2 396.5   46 58.47 0.505 19.077, 1711.0 -1.09
PWK/PhJ f 3701.0 3598.0   47 524.9 0.9724 1474.0, 17852.0 0.86
PWK/PhJ m 2475.0 959.0   48 138.4 0.3875 15.345, 6369.0 0.17
WSB/EiJ f 3370.0 1826.0   55 246.2 0.5418 1829.0, 14358.0 0.63
WSB/EiJ m 3557.0 3300.0   51 462.1 0.9278 1421.0, 23400.0 0.97


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 466.519744898 264.5802435088 985.8357623384 -52.7962725425
129S1/SvImJ m 627.2795734694 264.5802435088 1146.5955909098 107.9635560289
A/J f 744.76246 239.1001379305 1214.0663269586 275.4585930414
A/J m 457.1739819672 237.1322020953 922.615199973 -8.2672360386
C57BL/6J f 2299.4233333333 239.1001379305 2768.727200292 1830.1194663747
C57BL/6J m 2328.3050847458 241.1178963862 2801.5693921041 1855.0407773875
C57BL/6NJ f 2233.5384615385 513.6694954708 3241.7649002584 1225.3120228185
C57BL/6NJ m 2331.7384615385 513.6694954708 3339.9649002584 1323.5120228185
CAST/EiJ f 4459.6424242424 322.4025602154 5092.4516293564 3826.8332191284
CAST/EiJ m 4032.7918333333 338.1386578267 4696.4877268604 3369.0959398063
DBA/2J f 1909.4625 378.0505123605 2651.497067157 1167.427932843
DBA/2J m 1860.7958333333 378.0505123605 2602.8304004903 1118.7612661763
NOD/ShiLtJ f 4304.4861702128 270.1509647895 4834.7363554935 3774.2359849321
NOD/ShiLtJ m 4050.0454545455 279.2088073917 4598.0743019228 3502.0166071681
NZO/HlLtJ f 769.1830425532 270.1509647895 1299.4332278339 238.9328572725
NZO/HlLtJ m 785.1734130435 273.0716006402 1321.1561993614 249.1906267255
PWK/PhJ f 3700.5319148936 270.1509647895 4230.7821001743 3170.2817296129
PWK/PhJ m 2474.9030208333 267.3220809211 2999.6006951448 1950.2053465218
WSB/EiJ f 3370.0909090909 249.7319492978 3860.2628116375 2879.9190065443
WSB/EiJ m 3557.1960784314 259.3405119289 4066.2275920084 3048.1645648543


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 546.8996591837 187.0864843531 914.1115366946 179.6877816727
A/J both 600.9682209836 168.3749960868 931.4533367457 270.4831052216
C57BL/6J both 2313.8642090396 169.7842129853 2647.1153246272 1980.6130934519
C57BL/6NJ both 2282.6384615385 363.2191835361 2995.5622133289 1569.714709748
CAST/EiJ both 4246.2171287879 233.6028482009 4704.730958776 3787.7032987997
DBA/2J both 1885.1291666667 267.3220809211 2409.8268409782 1360.4314923551
NOD/ShiLtJ both 4177.2658123791 194.2544091532 4558.5468362146 3795.9847885437
NZO/HlLtJ both 777.1782277983 192.060955723 1154.1539585223 400.2024970744
PWK/PhJ both 3087.7174678635 190.0280497221 3460.7030267053 2714.7319090217
WSB/EiJ both 3463.6434937611 180.0163517765 3816.9781707533 3110.3088167689




  GWAS USING LINEAR MIXED MODELS