Project measure / variable:   CSNA03   pct_dist_perimeter_OFT_in

ID, description, units MPD:90115   pct_dist_perimeter_OFT_in   percentage of total distance traveled in perimeter, 60 min test (OFT), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of total distance traveled in perimeter, 60 min test (OFT), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means56.44   % 56.97   %
Median of the strain means56.87   % 56.01   %
SD of the strain means± 10.911 ± 10.474
Coefficient of variation (CV)0.1933 0.1838
Min–max range of strain means39.62   –   74.9   % 41.268   –   76.26   %
Mean sample size per strain43.4   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 444.6382 444.6382 3.605 0.0579
strain 9 94826.0249 10536.225 85.4248 < 0.0001
sex:strain 9 4778.4436 530.9382 4.3047 < 0.0001
Residuals 840 103604.8667 123.3391


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 46.083 20.947   48 3.0234 0.4545 -0.95
129S1/SvImJ m 59.04 19.916   49 2.8451 0.3373 14.017, 87.71 0.2
A/J f 72.76 17.032   59 2.2174 0.2341 1.5
A/J m 70.91 18.733   61 2.3986 0.2642 1.33
C57BL/6J f 49.03 5.1411   61 0.65825 0.1049 38.561, 62.84 -0.68
C57BL/6J m 48.187 6.3593   59 0.82791 0.132 26.187, 66.49 -0.84
C57BL/6NJ f 57.56 9.4857   13 2.6309 0.1648 40.562, 74.49 0.1
C57BL/6NJ m 47.873 10.149   13 2.8148 0.212 26.686, 61.53 -0.87
CAST/EiJ f 52.66 9.2385   33 1.6082 0.1754 16.2, 67.51 -0.35
CAST/EiJ m 55.39 5.2854   30 0.96498 0.0954 39.38, 62.68 -0.15
DBA/2J f 56.18 7.0693   23 1.4741 0.1258 35.106, 66.55 -0.02
DBA/2J m 55.14 6.9832   25 1.3966 0.1266 40.713, 69.1 -0.17
NOD/ShiLtJ f 39.62 5.9865   47 0.87321 0.1511 24.859, 54.56 -1.54
NOD/ShiLtJ m 41.268 6.3003   44 0.94981 0.1527 30.185, 54.17 -1.5
NZO/HlLtJ f 74.9 8.0465   47 1.1737 0.1074 50.7, 86.97 1.69
NZO/HlLtJ m 76.26 5.847   46 0.8621 0.0767 57.73, 85.89 1.84
PWK/PhJ f 57.78 5.4897   48 0.79236 0.095 41.464, 68.33 0.12
PWK/PhJ m 59.03 5.568   47 0.81217 0.0943 44.566, 68.81 0.2
WSB/EiJ f 57.79 5.5431   55 0.74743 0.0959 37.927, 68.21 0.12
WSB/EiJ m 56.63 5.6534   52 0.78398 0.0998 36.875, 67.62 -0.03


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 46.0828645833 1.6029863215 49.2291935059 42.9365356607
129S1/SvImJ m 59.0408979592 1.5865450015 62.1549559885 55.9268399299
A/J f 72.7578813559 1.4458539618 75.5957921209 69.919970591
A/J m 70.9073360656 1.4219539031 73.6983359836 68.1163361476
C57BL/6J f 49.0299508197 1.4219539031 51.8209507377 46.2389509017
C57BL/6J m 48.1866101695 1.4458539618 51.0245209344 45.3486994045
C57BL/6NJ f 57.5641538462 3.0801988829 63.6099439458 51.5183637465
C57BL/6NJ m 47.8731538462 3.0801988829 53.9189439458 41.8273637465
CAST/EiJ f 52.6596666667 1.9332742445 56.4542821224 48.8650512109
CAST/EiJ m 55.3945333333 2.0276351336 59.3743595987 51.414707068
DBA/2J f 56.1769565217 2.3157225096 60.7222384189 51.6316746245
DBA/2J m 55.139 2.2211630022 59.498681241 50.779318759
NOD/ShiLtJ f 39.620212766 1.6199496121 42.7998371017 36.4405884302
NOD/ShiLtJ m 41.2676363636 1.6742646083 44.5538697459 37.9814029814
NZO/HlLtJ f 74.8985106383 1.6199496121 78.0781349741 71.7188863025
NZO/HlLtJ m 76.2623913043 1.6374630899 79.4763909563 73.0483916524
PWK/PhJ f 57.778875 1.6029863215 60.9252039226 54.6325460774
PWK/PhJ m 59.0310851064 1.6199496121 62.2107094421 55.8514607706
WSB/EiJ f 57.7901454545 1.4975077906 60.7294419476 54.8508489615
WSB/EiJ m 56.6275769231 1.5400994414 59.6504719729 53.6046818733


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 52.5618812713 1.1276845956 54.775291711 50.3484708315
A/J both 71.8326087108 1.0139584041 73.8227982779 69.8424191436
C57BL/6J both 48.6082804946 1.0139584041 50.5984700617 46.6180909275
C57BL/6NJ both 52.7186538462 2.1780295175 56.9936730232 48.4436346691
CAST/EiJ both 54.0271 1.4007902716 56.7765601088 51.2776398912
DBA/2J both 55.6579782609 1.6043796171 58.8070419331 52.5089145886
NOD/ShiLtJ both 40.4439245648 1.1648389078 42.7302611957 38.1575879339
NZO/HlLtJ both 75.5804509713 1.1516859507 77.8409710818 73.3199308609
PWK/PhJ both 58.4049800532 1.13949571 60.6415732552 56.1683868512
WSB/EiJ both 57.2088611888 1.0740619014 59.3170214268 55.1007009508




  GWAS USING LINEAR MIXED MODELS