Project measure / variable:   CSNA03   pct_dist_perimeter_corners_OFT_in

ID, description, units MPD:90112   pct_dist_perimeter_corners_OFT_in   percentage of total distance traveled in perimeter and corners, 60 min test (OFT), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of total distance traveled in perimeter and corners, 60 min test (OFT), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means67.38   % 67.13   %
Median of the strain means67.29   % 65.51   %
SD of the strain means± 13.002 ± 12.899
Coefficient of variation (CV)0.193 0.1921
Min–max range of strain means45.123   –   88.63   % 47.358   –   88.89   %
Mean sample size per strain43.4   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 162.8027 162.8027 1.1614 0.2815
strain 9 141683.5229 15742.6137 112.3027 < 0.0001
sex:strain 9 4416.5161 490.724 3.5007 0.0003
Residuals 840 117751.3931 140.1802


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 62.89 22.183   48 3.2019 0.3528 17.215, 95.9 -0.35
129S1/SvImJ m 73.31 20.519   49 2.9313 0.2799 14.436, 98.9 0.48
A/J f 87.89 17.357   59 2.2597 0.1975 1.58
A/J m 85.28 19.921   61 2.5506 0.2336 3.1143, 99.49 1.41
C57BL/6J f 57.73 5.9463   61 0.76134 0.103 45.468, 71.78 -0.74
C57BL/6J m 56.54 7.0491   59 0.91771 0.1247 30.312, 74.94 -0.82
C57BL/6NJ f 68.09 10.963   13 3.0405 0.161 53.82, 89.08 0.05
C57BL/6NJ m 55.47 12.487   13 3.4632 0.2251 27.757, 72.52 -0.9
CAST/EiJ f 61.1 11.523   33 2.0058 0.1886 16.35, 81.22 -0.48
CAST/EiJ m 65.12 6.2857   30 1.1476 0.0965 44.139, 75.07 -0.16
DBA/2J f 66.79 8.5199   23 1.7765 0.1276 43.105, 83.06 -0.05
DBA/2J m 64.34 8.9765   25 1.7953 0.1395 46.187, 87.21 -0.22
NOD/ShiLtJ f 45.123 7.0478   47 1.028 0.1562 27.004, 61.89 -1.71
NOD/ShiLtJ m 47.358 7.2956   44 1.0999 0.1541 33.921, 62.88 -1.53
NZO/HlLtJ f 88.63 5.9797   47 0.87223 0.0675 59.5, 99.14 1.63
NZO/HlLtJ m 88.89 3.6442   46 0.53731 0.041 80.15, 96.28 1.69
PWK/PhJ f 67.8 6.5526   48 0.94579 0.0966 48.107, 78.41 0.03
PWK/PhJ m 69.1 7.1318   47 1.0403 0.1032 47.495, 81.81 0.15
WSB/EiJ f 67.79 6.1367   55 0.82747 0.0905 44.346, 77.96 0.03
WSB/EiJ m 65.9 7.2489   52 1.0052 0.11 40.736, 78.36 -0.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 62.8855833333 1.7089240639 66.239846022 59.5313206447
129S1/SvImJ m 73.3110612245 1.6913961742 76.6309203094 69.9912021395
A/J f 87.8888813559 1.5414071817 90.9143432281 84.8634194838
A/J m 85.2803 1.5159276221 88.2557507934 82.3048492066
C57BL/6J f 57.7315245902 1.5159276221 60.7069753835 54.7560737968
C57BL/6J m 56.5363389831 1.5414071817 59.5618008552 53.5108771109
C57BL/6NJ f 68.0876923077 3.2837622641 74.5330350082 61.6423496072
C57BL/6NJ m 55.4715384615 3.2837622641 61.916881162 49.026195761
CAST/EiJ f 61.104030303 2.0610399691 65.1494233163 57.0586372898
CAST/EiJ m 65.1206333333 2.161636956 69.36347732 60.8777893467
DBA/2J f 66.7919565217 2.4687633754 71.6376258247 61.9462872188
DBA/2J m 64.34268 2.3679546439 68.9904827189 59.6948772811
NOD/ShiLtJ f 45.1228085106 1.72700842 48.512567031 41.7330499902
NOD/ShiLtJ m 47.3575909091 1.7849129715 50.8610040269 43.8541777913
NZO/HlLtJ f 88.6291489362 1.72700842 92.0189074566 85.2393904158
NZO/HlLtJ m 88.89 1.7456793239 92.3164056235 85.4635943765
PWK/PhJ f 67.8035208333 1.7089240639 71.157783522 64.4492581447
PWK/PhJ m 69.1035106383 1.72700842 72.4932691587 65.7137521179
WSB/EiJ f 67.7888363636 1.5964746952 70.9223843175 64.6552884098
WSB/EiJ m 65.9038076923 1.641881132 69.1264790426 62.6811363421


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 68.0983222789 1.2022107214 70.4580120111 65.7386325468
A/J both 86.584590678 1.080968623 88.7063073746 84.4628739813
C57BL/6J both 57.1339317866 1.080968623 59.2556484833 55.0122150899
C57BL/6NJ both 61.7796153846 2.3219705647 66.3371609152 57.222069854
CAST/EiJ both 63.1123318182 1.4933653341 66.0434975303 60.1811661061
DBA/2J both 65.5673182609 1.7104094393 68.9244964326 62.2101400891
NOD/ShiLtJ both 46.2401997099 1.241820478 48.6776351603 43.8027642594
NZO/HlLtJ both 88.7595744681 1.2277982718 91.1694872426 86.3496616936
PWK/PhJ both 68.4535157358 1.2148024056 70.8379203266 66.069111145
WSB/EiJ both 66.846322028 1.1450442245 69.0938058105 64.5988382454




  GWAS USING LINEAR MIXED MODELS