Project measure / variable:   CSNA03   amb_dist_OFT_in_bin12

ID, description, units MPD:90052   amb_dist_OFT_in_bin12   distance traveled in successive 5 min intervals, 60 min test (OFT), founders   [cm]  55-60 min  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in successive 5 min intervals, 60 min test (OFT), founders 55-60 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means825.1   cm 734.2   cm
Median of the strain means760.8   cm 845.0   cm
SD of the strain means± 581.3 ± 465.3
Coefficient of variation (CV)0.7045 0.6337
Min–max range of strain means49.151   –   1563.0   cm 69.99   –   1343.0   cm
Mean sample size per strain43.4   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2595301.9403 2595301.9403 8.9649 0.0028
strain 9 228854066.835 25428229.6483 87.8362 < 0.0001
sex:strain 9 7961479.1126 884608.7903 3.0557 0.0013
Residuals 840 243176579.4106 289495.9279


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 49.151 229.8   48 33.174 4.6761 -1.33
129S1/SvImJ m 69.99 221.6   49 31.664 3.167 -1.43
A/J f 304.6 363.3   59 47.297 1.1925 -0.9
A/J m 238.1 419.4   61 53.7 1.7614 -1.07
C57BL/6J f 857.2 324.8   61 41.581 0.3789 288.7, 1856.0 0.06
C57BL/6J m 952.6 351.0   59 45.691 0.3684 167.7, 2464.0 0.47
C57BL/6NJ f 664.3 257.8   13 71.5 0.3881 357.3, 1223.0 -0.28
C57BL/6NJ m 737.3 572.5   13 158.8 0.7765 152.9, 2471.0 0.01
CAST/EiJ f 1379.0 837.0   33 145.7 0.6069 393.6, 4427.0 0.95
CAST/EiJ m 993.2 550.5   30 100.5 0.5543 206.6, 3106.0 0.56
DBA/2J f 509.0 338.5   23 70.58 0.665 -0.54
DBA/2J m 616.7 716.0   25 143.2 1.161 -0.25
NOD/ShiLtJ f 1550.0 991.5   47 144.6 0.6397 14.971, 6229.0 1.25
NOD/ShiLtJ m 1046.0 553.7   44 83.47 0.5294 0.67
NZO/HlLtJ f 127.5 180.6   47 26.343 1.4168 -1.2
NZO/HlLtJ m 99.55 161.0   46 23.744 1.6177 -1.36
PWK/PhJ f 1563.0 395.2   48 57.05 0.2528 294.5, 2459.0 1.27
PWK/PhJ m 1343.0 548.5   47 80.01 0.4084 1.31
WSB/EiJ f 1247.0 703.7   55 94.89 0.5643 59.4, 3750.0 0.73
WSB/EiJ m 1246.0 958.9   52 133.0 0.7693 15.24, 5739.0 1.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 49.1510833333 77.6605766393 201.5826513053 -103.2804846387
129S1/SvImJ m 69.9856122449 76.8640368482 220.8537381906 -80.8825137008
A/J f 304.6471491525 70.047916756 442.1366482826 167.1576500225
A/J m 238.103147541 68.8900201997 373.3199364328 102.8863586491
C57BL/6J f 857.1803278688 68.8900201997 992.3971167607 721.963538977
C57BL/6J m 952.6152542373 70.047916756 1090.1047533674 815.1257551072
C57BL/6NJ f 664.3461538462 149.2277371283 957.2491805778 371.4431271145
C57BL/6NJ m 737.2769230769 149.2277371283 1030.1799498086 444.3738963453
CAST/EiJ f 1379.1363636364 93.6621795328 1562.9757516977 1195.296975575
CAST/EiJ m 993.2 98.2337226329 1186.0123768409 800.3876231591
DBA/2J f 509.0 112.1908172383 729.2072521701 288.7927478299
DBA/2J m 616.72116 107.6096515875 827.9365363239 405.5057836761
NOD/ShiLtJ f 1550.0015106383 78.4824045695 1704.0461559969 1395.9568652797
NOD/ShiLtJ m 1045.9681818182 81.1138268493 1205.1777620955 886.7586015409
NZO/HlLtJ f 127.4728723404 78.4824045695 281.517517699 -26.5717730181
NZO/HlLtJ m 99.5485217391 79.3308876561 255.2585630151 -56.1615195368
PWK/PhJ f 1563.3520833333 77.6605766393 1715.7836513053 1410.9205153613
PWK/PhJ m 1342.8808510638 78.4824045695 1496.9254964224 1188.8362057053
WSB/EiJ f 1247.0818181818 72.5504123 1389.4831958495 1104.6804405141
WSB/EiJ m 1246.4382692308 74.6138685642 1392.8897825966 1099.9867558649


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 59.5683477891 54.6334268662 166.8024076078 -47.6657120295
A/J both 271.3751483468 49.1236845243 367.7947293058 174.9555673877
C57BL/6J both 904.8977910531 49.1236845243 1001.3173720121 808.478210094
C57BL/6NJ both 700.8115384615 105.5199448646 907.9252548936 493.6978220295
CAST/EiJ both 1186.1681818182 67.864696524 1319.3724734775 1052.9638901589
DBA/2J both 562.86058 77.7280782398 715.4246395815 410.2965204185
NOD/ShiLtJ both 1297.9848462283 56.4334580128 1408.7519929999 1187.2176994566
NZO/HlLtJ both 113.5106970398 55.7962309733 223.0270995987 3.9942944808
PWK/PhJ both 1453.1164671986 55.2056450713 1561.4736724021 1344.7592619951
WSB/EiJ both 1246.7600437063 52.0355448396 1348.8950011509 1144.6250862617




  GWAS USING LINEAR MIXED MODELS