Project measure / variable:   CSNA03   amb_dist_OFT_in_bin10

ID, description, units MPD:90046   amb_dist_OFT_in_bin10   distance traveled in successive 5 min intervals, 60 min test (OFT), founders   [cm]  45-50 min  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in successive 5 min intervals, 60 min test (OFT), founders 45-50 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means897.1   cm 782.1   cm
Median of the strain means847.6   cm 797.7   cm
SD of the strain means± 582.9 ± 485.7
Coefficient of variation (CV)0.6498 0.621
Min–max range of strain means56.71   –   1707.0   cm 59.46   –   1506.0   cm
Mean sample size per strain43.5   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3544966.0618 3544966.0618 10.7761 0.0011
strain 9 240022455.7157 26669161.7462 81.0697 < 0.0001
sex:strain 9 4453428.5335 494825.3926 1.5042 0.1418
Residuals 841 276660438.7116 328966.0389


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 56.71 176.0   48 25.403 3.1032 -1.44
129S1/SvImJ m 59.46 155.9   49 22.275 2.6225 -1.49
A/J f 339.7 360.5   59 46.936 1.0614 -0.96
A/J m 363.2 588.8   61 75.38 1.621 -0.86
C57BL/6J f 957.0 304.2   61 38.95 0.3179 371.6, 1579.0 0.1
C57BL/6J m 902.9 348.7   59 45.403 0.3862 144.7, 2037.0 0.25
C57BL/6NJ f 738.3 272.4   13 75.55 0.369 338.0, 1221.0 -0.27
C57BL/6NJ m 692.5 242.0   13 67.12 0.3495 342.9, 1207.0 -0.18
CAST/EiJ f 1496.0 1047.0   33 182.3 0.6999 354.9, 5228.0 1.03
CAST/EiJ m 1117.0 445.6   30 81.35 0.399 488.2, 2131.0 0.69
DBA/2J f 605.3 265.3   24 54.15 0.4382 8.0, 1163.0 -0.5
DBA/2J m 688.3 332.2   25 66.43 0.4826 -0.19
NOD/ShiLtJ f 1445.0 1012.0   47 147.7 0.7003 253.0, 6259.0 0.94
NOD/ShiLtJ m 1067.0 466.7   44 70.35 0.4375 94.99, 2289.0 0.59
NZO/HlLtJ f 266.0 251.6   47 36.694 0.9457 -1.08
NZO/HlLtJ m 134.9 196.9   46 29.034 1.46 -1.33
PWK/PhJ f 1707.0 405.1   48 58.47 0.2373 739.5, 2579.0 1.39
PWK/PhJ m 1506.0 645.5   47 94.15 0.4286 1.49
WSB/EiJ f 1360.0 908.7   55 122.5 0.6682 399.4, 5907.0 0.79
WSB/EiJ m 1290.0 1027.0   52 142.4 0.7959 1.05


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 56.7149166667 82.7856215998 219.2056037212 -105.7757703879
129S1/SvImJ m 59.4562 81.9365158555 220.2802718487 -101.3678718487
A/J f 339.6554745763 74.6705803815 486.2180499907 193.0928991619
A/J m 363.2203442623 73.4362708989 507.3602309056 219.080457619
C57BL/6J f 957.0295081967 73.4362708989 1101.16939484 812.8896215534
C57BL/6J m 902.9220338983 74.6705803815 1049.4846093127 756.3594584839
C57BL/6NJ f 738.2769230769 159.0757049806 1050.5089278197 426.0449183342
C57BL/6NJ m 692.4692307692 159.0757049806 1004.701235512 380.2372260265
CAST/EiJ f 1496.3242424242 99.8432163211 1692.2953845649 1300.3531002835
CAST/EiJ m 1116.6466666666 104.7164487073 1322.1829345298 911.1103988035
DBA/2J f 605.3458333333 117.0765488359 835.1423667252 375.5492999415
DBA/2J m 688.3216 114.7111221976 913.4753005882 463.1678994118
NOD/ShiLtJ f 1445.4595744681 83.6616843204 1609.6697875782 1281.249361358
NOD/ShiLtJ m 1066.6338636364 86.4667617296 1236.3498511389 896.9178761339
NZO/HlLtJ f 266.0074255319 83.6616843204 430.217638642 101.7972124218
NZO/HlLtJ m 134.8728652174 84.5661612477 300.8583754686 -31.1126450338
PWK/PhJ f 1707.2604166667 82.7856215998 1869.7511037212 1544.7697296121
PWK/PhJ m 1505.9936170213 83.6616843204 1670.2038301313 1341.7834039112
WSB/EiJ f 1359.9290909091 77.3382228087 1511.7276848787 1208.1304969395
WSB/EiJ m 1290.0057692308 79.5378524903 1446.1217716021 1133.8897668594


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 58.0855583333 58.2388439407 172.3961062559 -56.2249895892
A/J both 351.4379094193 52.3654978446 454.2203196771 248.6554991615
C57BL/6J both 929.9757710475 52.3654978446 1032.7581813053 827.1933607897
C57BL/6NJ both 715.3730769231 112.4835097138 936.1544447802 494.591709066
CAST/EiJ both 1306.4854545454 72.343283163 1448.4800371525 1164.4908719383
DBA/2J both 646.8337166667 81.9535841852 807.691290041 485.9761432924
NOD/ShiLtJ both 1256.0467190522 60.1576643233 1374.1235060423 1137.9699320622
NZO/HlLtJ both 200.4401453747 59.4783848375 317.1836502293 83.69664052
PWK/PhJ both 1606.627016844 58.8488244721 1722.1348276936 1491.1192059943
WSB/EiJ both 1324.9674300699 55.4695202025 1433.8423805034 1216.0924796364




  GWAS USING LINEAR MIXED MODELS