Project measure / variable:   CSNA03   amb_dist_OFT_in_bin9

ID, description, units MPD:90043   amb_dist_OFT_in_bin9   distance traveled in successive 5 min intervals, 60 min test (OFT), founders   [cm]  40-45 min  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in successive 5 min intervals, 60 min test (OFT), founders 40-45 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means921.3   cm 806.2   cm
Median of the strain means877.0   cm 877.7   cm
SD of the strain means± 580.9 ± 474.2
Coefficient of variation (CV)0.6305 0.5881
Min–max range of strain means89.25   –   1627.0   cm 99.14   –   1498.0   cm
Mean sample size per strain43.5   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3097356.9958 3097356.9958 11.5474 0.0007
strain 9 232632261.2412 25848029.0268 96.3655 < 0.0001
sex:strain 9 5346103.573 594011.5081 2.2146 0.0193
Residuals 841 225580625.6213 268229.0435


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 89.25 279.6   48 40.35 3.1324 -1.43
129S1/SvImJ m 99.14 199.7   49 28.527 2.0142 -1.49
A/J f 399.9 392.4   59 51.08 0.9812 -0.9
A/J m 413.0 893.3   61 114.4 2.1628 -0.83
C57BL/6J f 987.8 281.1   61 35.986 0.2845 178.4, 1576.0 0.11
C57BL/6J m 1044.0 341.3   59 44.434 0.327 578.2, 2824.0 0.5
C57BL/6NJ f 633.8 314.9   13 87.34 0.4969 60.59, 1135.0 -0.49
C57BL/6NJ m 608.8 185.7   13 51.51 0.305 399.8, 970.8 -0.42
CAST/EiJ f 1488.0 740.8   33 129.0 0.4978 260.9, 3970.0 0.98
CAST/EiJ m 1001.0 269.7   30 49.248 0.2695 604.2, 1629.0 0.41
DBA/2J f 766.2 260.4   24 53.16 0.3399 69.84, 1126.0 -0.27
DBA/2J m 754.4 302.3   25 60.46 0.4007 -0.11
NOD/ShiLtJ f 1573.0 989.6   47 144.3 0.6292 596.1, 7412.0 1.12
NOD/ShiLtJ m 1254.0 393.7   44 59.35 0.3139 451.4, 1894.0 0.94
NZO/HlLtJ f 233.1 256.7   47 37.439 1.1011 -1.18
NZO/HlLtJ m 180.6 227.8   46 33.584 1.2615 -1.32
PWK/PhJ f 1627.0 413.2   48 59.65 0.2539 599.5, 2374.0 1.21
PWK/PhJ m 1498.0 471.4   47 68.76 0.3147 1.46
WSB/EiJ f 1415.0 758.0   55 102.2 0.5358 310.5, 3843.0 0.85
WSB/EiJ m 1209.0 630.9   52 87.5 0.522 30.134, 3176.0 0.85


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 89.2466875 74.7536291684 235.9722701394 -57.4788951394
129S1/SvImJ m 99.1412857143 73.9869050114 244.3619508009 -46.0793793724
A/J f 399.8745762712 67.4259221319 532.217417948 267.5317345944
A/J m 413.0473770492 66.3113673148 543.2025830655 282.8921710329
C57BL/6J f 987.7704918033 66.3113673148 1117.9256978196 857.615285787
C57BL/6J m 1043.6305084746 67.4259221319 1175.9733501514 911.2876667978
C57BL/6NJ f 633.7530769231 143.6419275477 915.6918368914 351.8143169547
C57BL/6NJ m 608.8 143.6419275477 890.7387599683 326.8612400317
CAST/EiJ f 1488.3 90.1562689706 1665.2577108222 1311.3422891777
CAST/EiJ m 1000.8966666666 94.5566926144 1186.491479529 815.3018538043
DBA/2J f 766.1516666667 105.7175962066 973.6529755824 558.6503577509
DBA/2J m 754.444 103.5816670159 957.7529311213 551.1350688787
NOD/ShiLtJ f 1572.6468085106 75.5446948931 1720.9250860579 1424.3685309634
NOD/ShiLtJ m 1254.2659090909 78.0776192389 1407.5157820586 1101.0160361233
NZO/HlLtJ f 233.105812766 75.5446948931 381.3840903132 84.8275352187
NZO/HlLtJ m 180.5668021739 76.3614180331 330.4481347153 30.6854696325
PWK/PhJ f 1627.2541666667 74.7536291684 1773.9797493061 1480.5285840272
PWK/PhJ m 1497.8765957447 75.5446948931 1646.154873292 1349.5983181974
WSB/EiJ f 1414.6127272727 69.8347456559 1551.6835806723 1277.5418738732
WSB/EiJ m 1208.6968076923 71.8209637738 1349.6661876765 1067.7274277081


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 94.1939866071 52.5884188463 197.4139437001 -9.0259704858
A/J both 406.4609766602 47.2849141125 499.2712743058 313.6506790146
C57BL/6J both 1015.7005001389 47.2849141125 1108.5107977845 922.8902024934
C57BL/6NJ both 621.2765384615 101.5701810317 820.6373475145 421.9157294086
CAST/EiJ both 1244.5983333333 65.3244229842 1372.8163761167 1116.3802905499
DBA/2J both 760.2978333333 74.0023173446 905.5487495744 615.0469170923
NOD/ShiLtJ both 1413.4563588008 54.3210722292 1520.0771484679 1306.8355691336
NZO/HlLtJ both 206.8363074699 53.7076975175 312.253172151 101.4194427888
PWK/PhJ both 1562.5653812057 53.1392180982 1666.8664408758 1458.2643215355
WSB/EiJ both 1311.6547674825 50.0877792935 1409.9664973839 1213.3430375812




  GWAS USING LINEAR MIXED MODELS