Project measure / variable:   CSNA03   amb_dist_OFT_in_bin7

ID, description, units MPD:90037   amb_dist_OFT_in_bin7   distance traveled in successive 5 min intervals, 60 min test (OFT), founders   [cm]  30-35 min  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in successive 5 min intervals, 60 min test (OFT), founders 30-35 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1047.0   cm 972.1   cm
Median of the strain means932.1   cm 1001.0   cm
SD of the strain means± 675.1 ± 555.2
Coefficient of variation (CV)0.6446 0.5712
Min–max range of strain means73.86   –   1890.0   cm 154.5   –   1660.0   cm
Mean sample size per strain43.5   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2187030.9481 2187030.9481 2.2965 0.13
strain 9 321779818.4729 35753313.1637 37.5435 < 0.0001
sex:strain 9 7232073.4538 803563.7171 0.8438 0.5758
Residuals 841 800897947.2653 952316.2274


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 73.86 187.7   48 27.093 2.5414 -1.44
129S1/SvImJ m 154.5 305.7   49 43.667 1.9785 -1.47
A/J f 379.3 411.3   59 53.55 1.0845 -0.99
A/J m 371.3 507.2   61 64.95 1.3661 -1.08
C57BL/6J f 1030.0 314.4   61 40.256 0.3052 373.9, 1874.0 -0.03
C57BL/6J m 1072.0 260.7   59 33.946 0.2432 688.3, 1828.0 0.18
C57BL/6NJ f 773.7 251.4   13 69.72 0.3249 209.0, 1102.0 -0.41
C57BL/6NJ m 852.0 306.2   13 84.91 0.3593 501.7, 1725.0 -0.22
CAST/EiJ f 1726.0 1546.0   33 269.1 0.8954 735.2, 9388.0 1.01
CAST/EiJ m 1284.0 491.9   30 89.81 0.383 490.2, 2402.0 0.56
DBA/2J f 834.2 221.8   24 45.27 0.2659 318.6, 1317.0 -0.32
DBA/2J m 929.7 234.5   25 46.908 0.2523 279.7, 1247.0 -0.08
NOD/ShiLtJ f 1710.0 716.9   47 104.6 0.4193 601.2, 5448.0 0.98
NOD/ShiLtJ m 1660.0 1322.0   44 199.3 0.7966 425.2, 9480.0 1.24
NZO/HlLtJ f 329.0 239.5   47 34.937 0.728 -1.06
NZO/HlLtJ m 294.7 239.4   46 35.302 0.8124 6.35, 898.3 -1.22
PWK/PhJ f 1727.0 371.9   48 53.67 0.2153 876.6, 2553.0 1.01
PWK/PhJ m 1647.0 830.7   47 121.2 0.5045 1.22
WSB/EiJ f 1890.0 3015.0   55 406.6 1.5956 165.5, 23330.0 1.25
WSB/EiJ m 1456.0 870.1   52 120.7 0.5975 263.0, 5175.0 0.87


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 73.8596458333 140.8542558985 350.3267952392 -202.6075035725
129S1/SvImJ m 154.4944897959 139.4095586734 428.1260037358 -119.1370241439
A/J f 379.2977457627 127.047050368 628.6642674317 129.9312240937
A/J m 371.3026721311 124.9469544775 616.5471492044 126.0581950579
C57BL/6J f 1030.0786885246 124.9469544775 1275.3231655978 784.8342114514
C57BL/6J m 1072.1406779661 127.047050368 1321.5071996351 822.7741562971
C57BL/6NJ f 773.7076923077 270.6567834313 1304.9497829731 242.4656016423
C57BL/6NJ m 852.0230769231 270.6567834313 1383.2651675885 320.7809862576
CAST/EiJ f 1726.1090909091 169.8766243418 2059.5410187048 1392.6771631133
CAST/EiJ m 1284.34 178.1681067069 1634.0463561346 934.6336438653
DBA/2J f 834.1625 199.1979990096 1225.1460922404 443.1789077596
DBA/2J m 929.672 195.1733821428 1312.7561195158 546.5878804842
NOD/ShiLtJ f 1709.7234042553 142.3448186343 1989.1162134361 1430.3305950746
NOD/ShiLtJ m 1659.7227272727 147.1174721891 1948.4832471767 1370.9622073688
NZO/HlLtJ f 328.9977021277 142.3448186343 608.3905113084 49.6048929469
NZO/HlLtJ m 294.7356652174 143.8837262625 577.1490249838 12.322305451
PWK/PhJ f 1726.9958333333 140.8542558985 2003.4629827392 1450.5286839274
PWK/PhJ m 1646.5021276596 142.3448186343 1925.8949368403 1367.1093184788
WSB/EiJ f 1889.7709090909 131.5858673971 2148.0461697803 1631.4956484015
WSB/EiJ m 1456.3076923077 135.3283917157 1721.9287376404 1190.686646975


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 114.1770678146 99.0895383658 308.6688993408 -80.3147637115
A/J both 375.3002089469 89.0964287169 550.1776772385 200.4227406554
C57BL/6J both 1051.1096832454 89.0964287169 1225.9871515369 876.2322149538
C57BL/6NJ both 812.8653846154 191.3832469384 1188.5102693766 437.2204998541
CAST/EiJ both 1505.2245454545 123.0873081854 1746.8189296994 1263.6301612097
DBA/2J both 881.91725 139.4385993067 1155.6057645683 608.2287354317
NOD/ShiLtJ both 1684.723065764 102.3542842476 1885.622903791 1483.823227737
NZO/HlLtJ both 311.8666836725 101.1985351614 510.4980303908 113.2353369542
PWK/PhJ both 1686.7489804965 100.1273798678 1883.2778756509 1490.220085342
WSB/EiJ both 1673.0393006993 94.3777173159 1858.2828228585 1487.7957785401




  GWAS USING LINEAR MIXED MODELS