Project measure / variable:   CSNA03   amb_dist_OFT_in_bin6

ID, description, units MPD:90034   amb_dist_OFT_in_bin6   distance traveled in successive 5 min intervals, 60 min test (OFT), founders   [cm]  25-30 min  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in successive 5 min intervals, 60 min test (OFT), founders 25-30 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1076.0   cm 989.6   cm
Median of the strain means1014.0   cm 1019.0   cm
SD of the strain means± 624.3 ± 555.7
Coefficient of variation (CV)0.58 0.5615
Min–max range of strain means99.16   –   1877.0   cm 140.6   –   1886.0   cm
Mean sample size per strain43.5   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2102077.9384 2102077.9384 4.1008 0.0432
strain 9 285847991.9719 31760887.9969 61.9594 < 0.0001
sex:strain 9 7380545.3 820060.5889 1.5998 0.1109
Residuals 841 431103363.7094 512608.0425


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 99.16 254.8   48 36.784 2.5702 -1.57
129S1/SvImJ m 140.6 262.8   49 37.54 1.8687 -1.53
A/J f 446.2 562.2   59 73.19 1.2601 -1.01
A/J m 411.9 506.0   61 64.79 1.2284 -1.04
C57BL/6J f 1091.0 293.6   61 37.588 0.2691 374.5, 1797.0 0.02
C57BL/6J m 1043.0 303.6   59 39.523 0.291 532.8, 2127.0 0.1
C57BL/6NJ f 812.5 192.7   13 53.44 0.2371 389.1, 1061.0 -0.42
C57BL/6NJ m 866.7 251.8   13 69.85 0.2906 396.9, 1189.0 -0.22
CAST/EiJ f 1877.0 1267.0   33 220.5 0.6747 973.7, 7875.0 1.28
CAST/EiJ m 1248.0 488.8   30 89.25 0.3918 358.1, 2491.0 0.46
DBA/2J f 936.7 267.5   24 54.61 0.2856 194.1, 1508.0 -0.22
DBA/2J m 994.4 280.2   25 56.03 0.2817 612.1, 1651.0 0.01
NOD/ShiLtJ f 1822.0 899.3   47 131.2 0.4937 705.8, 5588.0 1.19
NOD/ShiLtJ m 1886.0 1184.0   44 178.4 0.6276 738.6, 8698.0 1.61
NZO/HlLtJ f 522.8 694.2   47 101.3 1.3279 -0.89
NZO/HlLtJ m 372.8 223.4   46 32.945 0.5994 -1.11
PWK/PhJ f 1751.0 293.1   48 42.31 0.1674 913.7, 2366.0 1.08
PWK/PhJ m 1484.0 529.0   47 77.16 0.3564 0.89
WSB/EiJ f 1404.0 665.9   55 89.79 0.4743 319.4, 3732.0 0.53
WSB/EiJ m 1449.0 1742.0   52 241.6 1.2021 368.4, 12845.0 0.83


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 99.1572125 103.3408642209 301.9934986034 -103.6790736034
129S1/SvImJ m 140.6208734694 102.2809299021 341.3767324121 -60.1349854733
A/J f 446.1529830508 93.2109001465 629.1062895922 263.1996765095
A/J m 411.9067868852 91.6701179891 591.8358635361 231.9777102344
C57BL/6J f 1090.9147540984 91.6701179891 1270.8438307492 910.9856774475
C57BL/6J m 1043.093220339 93.2109001465 1226.0465268803 860.1399137976
C57BL/6NJ f 812.5461538462 198.5733816038 1202.3037540672 422.7885536251
C57BL/6NJ m 866.7384615385 198.5733816038 1256.4960617595 476.9808613174
CAST/EiJ f 1877.2848484848 124.6337716843 2121.9146138936 1632.655083076
CAST/EiJ m 1247.7933333333 130.7170025233 1504.3631958198 991.2234708468
DBA/2J f 936.6916666667 146.1460517286 1223.5454934155 649.8378399178
DBA/2J m 994.408 143.193301863 1275.4662025197 713.3497974803
NOD/ShiLtJ f 1821.5872340426 104.434448794 2026.5699956473 1616.6044724378
NOD/ShiLtJ m 1885.8295454546 107.9360124481 2097.6851368204 1673.9739540887
NZO/HlLtJ f 522.8287234042 104.434448794 727.811485009 317.8459617995
NZO/HlLtJ m 372.7868478261 105.5635026748 579.9857036905 165.5879919616
PWK/PhJ f 1751.0979166667 103.3408642209 1953.9342027701 1548.2616305633
PWK/PhJ m 1484.3808510638 104.434448794 1689.3636126686 1279.3980894591
WSB/EiJ f 1403.9872727273 96.5409044217 1593.4766742102 1214.4978712443
WSB/EiJ m 1449.3942307692 99.2866908019 1644.2730308797 1254.5154306587


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 119.8890429847 72.6992483448 262.5823100473 -22.8042240779
A/J both 429.029884968 65.3675807229 557.3326372757 300.7271326604
C57BL/6J both 1067.0039872187 65.3675807229 1195.3067395263 938.701234911
C57BL/6NJ both 839.6423076923 140.4125846952 1115.2425498276 564.042065557
CAST/EiJ both 1562.5390909091 90.3057470388 1739.7901956026 1385.2879862155
DBA/2J both 965.5498333333 102.30223621 1166.3475120575 764.7521546092
NOD/ShiLtJ both 1853.7083897486 75.0945019261 2001.1030336032 1706.313745894
NZO/HlLtJ both 447.8077856152 74.2465608494 593.5381002606 302.0774709697
PWK/PhJ both 1617.7393838652 73.4606838942 1761.9271880611 1473.5515796693
WSB/EiJ both 1426.6907517483 69.2423158137 1562.5987905161 1290.7827129804




  GWAS USING LINEAR MIXED MODELS