Project measure / variable:   CSNA03   dist_slope_OFT_in

ID, description, units MPD:90016   dist_slope_OFT_in   distance traveled slope, 60 min test (OFT), founders    
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled slope, 60 min test (OFT), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means-13.964   None -15.523   None
Median of the strain means-11.008   None -12.17   None
SD of the strain means± 8.6684 ± 10.151
Coefficient of variation (CV)-0.6208 -0.6539
Min–max range of strain means-28.154   –   -3.8745   None -36.717   –   -4.4325   None
Mean sample size per strain43.4   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 65.9126 65.9126 0.3276 0.5672
strain 9 65396.1178 7266.2353 36.1163 < 0.0001
sex:strain 9 6753.2605 750.3623 3.7296 0.0001
Residuals 840 168999.4482 201.1898


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f -9.1684 38.144   48 5.5057 -4.1604 -260.4, 9.6223 0.55
129S1/SvImJ m -6.6867 9.125   49 1.3036 -1.3646 -46.777, 1.2104 0.87
A/J f -3.8745 8.7453   59 1.1385 -2.2571 -38.425, 11.715 1.16
A/J m -4.4325 9.1623   61 1.1731 -2.0671 -30.529, 29.225 1.09
C57BL/6J f -17.185 6.7499   61 0.86424 -0.3928 -34.102, 2.255 -0.37
C57BL/6J m -13.065 6.1575   59 0.80163 -0.4713 -26.76, 2.6413 0.24
C57BL/6NJ f -8.0262 8.2372   13 2.2846 -1.0263 -18.6, 9.4889 0.69
C57BL/6NJ m -20.295 27.847   13 7.7234 -1.3721 -92.3, -4.0834 -0.47
CAST/EiJ f -28.154 25.976   33 4.5218 -0.9226 -135.1, 5.6108 -1.64
CAST/EiJ m -21.641 11.338   30 2.07 -0.5239 -57.66, 1.635 -0.6
DBA/2J f -11.075 6.2551   23 1.3043 -0.5648 -22.995, -0.45593 0.33
DBA/2J m -10.104 8.8602   25 1.772 -0.8769 -25.672, 7.908 0.53
NOD/ShiLtJ f -22.739 14.2   47 2.0713 -0.6245 -50.72, 33.753 -1.01
NOD/ShiLtJ m -36.717 13.678   44 2.062 -0.3725 -95.26, -17.763 -2.09
NZO/HlLtJ f -10.942 4.4214   47 0.64493 -0.4041 -25.596, -3.5902 0.35
NZO/HlLtJ m -11.275 3.6855   46 0.54339 -0.3269 -22.04, -2.1492 0.42
PWK/PhJ f -3.9951 9.9362   48 1.4342 -2.4871 -32.705, 24.837 1.15
PWK/PhJ m -6.4659 12.632   47 1.8425 -1.9536 -64.63, 11.874 0.89
WSB/EiJ f -24.482 13.687   55 1.8455 -0.559 -95.3, 9.8761 -1.21
WSB/EiJ m -24.552 7.7988   52 1.0815 -0.3176 -43.471, -10.345 -0.89


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f -9.1684395833 2.0473042198 -5.1500069906 -13.1868721761
129S1/SvImJ m -6.6867471429 2.0263056727 -2.7095303329 -10.6639639528
A/J f -3.8744786441 1.8466177019 -0.2499519675 -7.4990053206
A/J m -4.432504918 1.8160929929 -0.8678918999 -7.9971179362
C57BL/6J f -17.1852803279 1.8160929929 -13.6206673097 -20.749893346
C57BL/6J m -13.0652220339 1.8466177019 -9.4406953573 -16.6897487105
C57BL/6NJ f -8.0262076923 3.9339725399 -0.3046373851 -15.7477779995
C57BL/6NJ m -20.2950307692 3.9339725399 -12.573460462 -28.0166010765
CAST/EiJ f -28.1544121212 2.4691417923 -23.3080000647 -33.0008241778
CAST/EiJ m -21.6405366667 2.5896577591 -16.5575768199 -26.7234965135
DBA/2J f -11.0750317391 2.9575975803 -5.2698825102 -16.8801809681
DBA/2J m -10.103532 2.8368279418 -4.535428466 -15.671635534
NOD/ShiLtJ f -22.7392517021 2.0689694181 -18.6782948289 -26.8002085753
NOD/ShiLtJ m -36.7171363636 2.1383395177 -32.5200204055 -40.9142523218
NZO/HlLtJ f -10.9416 2.0689694181 -6.8806431268 -15.0025568732
NZO/HlLtJ m -11.2754108696 2.0913373051 -7.170550484 -15.3802712552
PWK/PhJ f -3.9951125 2.0473042198 0.0233200928 -8.0135450928
PWK/PhJ m -6.4659034043 2.0689694181 -2.4049465311 -10.5268602775
WSB/EiJ f -24.4820181818 1.9125890082 -20.728003545 -28.2360328186
WSB/EiJ m -24.5525 1.96698627 -20.6917148464 -28.4132851536


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both -7.9275933631 1.4402577241 -5.1006668494 -10.7545198768
A/J both -4.1534917811 1.2950087544 -1.6116588008 -6.6953247613
C57BL/6J both -15.1252511809 1.2950087544 -12.5834182006 -17.6670841612
C57BL/6NJ both -14.1606192308 2.78173866 -8.7006445051 -19.6205939564
CAST/EiJ both -24.8974743939 1.7890631976 -21.385915245 -28.4090335429
DBA/2J both -10.5892818696 2.049083711 -6.5673565055 -14.6112072336
NOD/ShiLtJ both -29.7281940329 1.4877105184 -26.8081275485 -32.6482605172
NZO/HlLtJ both -11.1085054348 1.470911807 -8.2214113286 -13.9955995409
PWK/PhJ both -5.2305079521 1.4553426591 -2.3739728469 -8.0870430573
WSB/EiJ both -24.5172590909 1.3717718196 -21.824756171 -27.2097620108




  GWAS USING LINEAR MIXED MODELS