Project measure / variable:   CSNA03   pct_dist_center_OFT_in

ID, description, units MPD:90013   pct_dist_center_OFT_in   percentage of total distance traveled in center, 60 min test (OFT), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of total distance traveled in center, 60 min test (OFT), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means32.617   % 32.868   %
Median of the strain means32.709   % 34.487   %
SD of the strain means± 13.002 ± 12.899
Coefficient of variation (CV)0.3986 0.3924
Min–max range of strain means11.371   –   54.88   % 11.11   –   52.64   %
Mean sample size per strain43.4   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 162.6803 162.6803 1.1605 0.2817
strain 9 141679.0253 15742.1139 112.2955 < 0.0001
sex:strain 9 4416.6062 490.734 3.5006 0.0003
Residuals 840 117755.1201 140.1847


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 37.114 22.184   48 3.202 0.5977 4.1018, 82.79 0.35
129S1/SvImJ m 26.689 20.519   49 2.9313 0.7688 1.0966, 85.56 -0.48
A/J f 12.111 17.357   59 2.2597 1.4331 0.36806, 100.0 -1.58
A/J m 14.72 19.922   61 2.5507 1.3534 0.50859, 96.89 -1.41
C57BL/6J f 42.268 5.9464   61 0.76136 0.1407 28.215, 54.53 0.74
C57BL/6J m 43.464 7.0492   59 0.91773 0.1622 25.056, 69.69 0.82
C57BL/6NJ f 31.913 10.964   13 3.0408 0.3436 10.922, 46.183 -0.05
C57BL/6NJ m 44.529 12.487   13 3.4633 0.2804 27.476, 72.24 0.9
CAST/EiJ f 38.896 11.522   33 2.0058 0.2962 18.777, 83.65 0.48
CAST/EiJ m 34.879 6.2859   30 1.1476 0.1802 24.926, 55.86 0.16
DBA/2J f 33.207 8.5191   23 1.7764 0.2565 16.944, 56.89 0.05
DBA/2J m 35.658 8.9757   25 1.7951 0.2517 12.794, 53.81 0.22
NOD/ShiLtJ f 54.88 7.0481   47 1.0281 0.1284 38.112, 73.0 1.71
NOD/ShiLtJ m 52.64 7.2961   44 1.0999 0.1386 37.117, 66.08 1.53
NZO/HlLtJ f 11.371 5.9798   47 0.87225 0.5259 0.85716, 40.501 -1.63
NZO/HlLtJ m 11.11 3.6446   46 0.53736 0.328 3.7214, 19.855 -1.69
PWK/PhJ f 32.197 6.5531   48 0.94586 0.2035 21.588, 51.89 -0.03
PWK/PhJ m 30.897 7.1313   47 1.0402 0.2308 18.19, 52.5 -0.15
WSB/EiJ f 32.21 6.1368   55 0.82748 0.1905 22.035, 55.65 -0.03
WSB/EiJ m 34.096 7.2485   52 1.0052 0.2126 21.645, 59.26 0.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 37.113975 1.7089511086 40.4682907719 33.7596592281
129S1/SvImJ m 26.6891306122 1.6914229416 30.009042236 23.3692189885
A/J f 12.1113242373 1.5414315754 15.1368339892 9.0858144854
A/J m 14.7201386885 1.5159516126 17.6956365702 11.7446408068
C57BL/6J f 42.268295082 1.5159516126 45.2437929637 39.2927972003
C57BL/6J m 43.4636610169 1.5414315754 46.4891707689 40.438151265
C57BL/6NJ f 31.9126923077 3.2838142316 38.3581370097 25.4672476057
C57BL/6NJ m 44.5286923077 3.2838142316 50.9741370097 38.0832476057
CAST/EiJ f 38.8958484848 2.0610725863 42.9413055189 34.8503914508
CAST/EiJ m 34.8790666667 2.1616711652 39.1219777989 30.6361555344
DBA/2J f 33.2074347826 2.4688024451 38.0531807712 28.361688794
DBA/2J m 35.65804 2.3679921182 40.3059162732 31.0101637268
NOD/ShiLtJ f 54.8771702128 1.727035751 58.2669823782 51.4873580474
NOD/ShiLtJ m 52.6418409091 1.7849412188 56.1453094705 49.1383723477
NZO/HlLtJ f 11.3712182979 1.727035751 14.7610304633 7.9814061325
NZO/HlLtJ m 11.1104347826 1.7457069504 14.5368946311 7.6839749342
PWK/PhJ f 32.1965625 1.7089511086 35.5508782719 28.8422467281
PWK/PhJ m 30.8965744681 1.727035751 34.2863866335 27.5067623027
WSB/EiJ f 32.2098363636 1.5964999604 35.3434339078 29.0762388195
WSB/EiJ m 34.0963461538 1.6419071158 37.3190685048 30.8736238029


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 31.9015528061 1.2022297471 34.2612798818 29.5418257304
A/J both 13.4157314629 1.08098573 15.537481737 11.2939811888
C57BL/6J both 42.8659780495 1.08098573 44.9877283236 40.7442277753
C57BL/6NJ both 38.2206923077 2.3220073113 42.7783099642 33.6630746512
CAST/EiJ both 36.8874575758 1.4933889675 39.8186696753 33.9562454762
DBA/2J both 34.4327373913 1.7104365075 37.7899686924 31.0755060902
NOD/ShiLtJ both 53.7595055609 1.2418401306 56.1969795853 51.3220315366
NZO/HlLtJ both 11.2408265402 1.2278177024 13.6507774531 8.8308756274
PWK/PhJ both 31.546568484 1.2148216306 33.9310108095 29.1621261586
WSB/EiJ both 33.1530912587 1.1450623455 35.4006106091 30.9055719084




  GWAS USING LINEAR MIXED MODELS