Project measure / variable:   CSNA03   dist_perimeter_OFT_in

ID, description, units MPD:90007   dist_perimeter_OFT_in   distance traveled in perimeter, 60 min test (OFT), founders   [cm]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in perimeter, 60 min test (OFT), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means7044.0   cm 6507.0   cm
Median of the strain means6320.0   cm 6206.0   cm
SD of the strain means± 3798.0 ± 3397.0
Coefficient of variation (CV)0.5392 0.522
Min–max range of strain means1328.0   –   11952.0   cm 1240.0   –   10869.0   cm
Mean sample size per strain43.4   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 107623607.7031 107623607.7031 13.5184 0.0003
strain 9 11095078615.5252 1232786512.8361 154.8485 < 0.0001
sex:strain 9 52863512.1535 5873723.5726 0.7378 0.6744
Residuals 840 6687443427.2578 7961242.1753


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1328.0 4231.0   48 610.6 3.1854 -1.5
129S1/SvImJ m 1240.0 1478.0   49 211.2 1.1922 12.7, 6476.0 -1.55
A/J f 3350.0 2851.0   59 371.2 0.851 -0.97
A/J m 2816.0 2151.0   61 275.4 0.764 -1.09
C57BL/6J f 6996.0 1606.0   61 205.7 0.2296 4327.0, 10918.0 -0.01
C57BL/6J m 6532.0 1226.0   59 159.7 0.1877 4254.0, 9084.0 0.01
C57BL/6NJ f 5527.0 1226.0   13 340.1 0.2219 3996.0, 8795.0 -0.4
C57BL/6NJ m 5682.0 3015.0   13 836.1 0.5306 3430.0, 15210.0 -0.24
CAST/EiJ f 11213.0 4166.0   33 725.2 0.3715 3595.0, 24963.0 1.1
CAST/EiJ m 9483.0 2364.0   30 431.6 0.2493 4340.0, 14404.0 0.88
DBA/2J f 5643.0 1099.0   23 229.1 0.1947 3341.0, 7548.0 -0.37
DBA/2J m 5881.0 1515.0   25 303.1 0.2577 3071.0, 9793.0 -0.18
NOD/ShiLtJ f 9007.0 3873.0   47 565.0 0.43 4661.0, 30401.0 0.52
NOD/ShiLtJ m 8632.0 2446.0   44 368.7 0.2833 4266.0, 17849.0 0.63
NZO/HlLtJ f 3650.0 1431.0   47 208.7 0.3921 1404.0, 8008.0 -0.89
NZO/HlLtJ m 3186.0 915.7   46 135.0 0.2874 1485.0, 5741.0 -0.98
PWK/PhJ f 11779.0 1888.0   48 272.6 0.1603 7265.0, 17943.0 1.25
PWK/PhJ m 10869.0 2778.0   47 405.2 0.2556 13.881, 16270.0 1.28
WSB/EiJ f 11952.0 4621.0   55 623.0 0.3866 6333.0, 31238.0 1.29
WSB/EiJ m 10747.0 4579.0   52 635.0 0.4261 5796.0, 31016.0 1.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1328.0819895833 407.2581638047 2127.44510488 528.7188742867
129S1/SvImJ m 1239.8873469388 403.0810465754 2031.0516494476 448.7230444301
A/J f 3350.4699322033 367.3367774346 4071.475664857 2629.4641995497
A/J m 2815.7819672131 361.2646769452 3524.8694288656 2106.6945055605
C57BL/6J f 6995.868852459 361.2646769452 7704.9563141115 6286.7813908064
C57BL/6J m 6532.1355932203 367.3367774346 7253.1413258739 5811.1298605667
C57BL/6NJ f 5527.3076923077 782.5619747051 7063.3141707757 3991.3012138397
C57BL/6NJ m 5681.7692307693 782.5619747051 7217.7757092372 4145.7627523013
CAST/EiJ f 11213.2424242424 491.1718262361 12177.3106150383 10249.1742334466
CAST/EiJ m 9482.8666666667 515.1453573283 10493.9899154127 8471.7434179206
DBA/2J f 5643.0869565217 588.3374577092 6797.8710832451 4488.3028297983
DBA/2J m 5880.84 564.3134652055 6988.4700235122 4773.2099764877
NOD/ShiLtJ f 9007.085106383 411.5678940218 9814.9073261952 8199.2628865709
NOD/ShiLtJ m 8631.5454545455 425.3672791436 9466.4529987552 7796.6379103358
NZO/HlLtJ f 3649.9787234043 411.5678940218 4457.8009432164 2842.1565035921
NZO/HlLtJ m 3186.4782608695 416.0174059723 4003.0339476822 2369.9225740568
PWK/PhJ f 11778.6875 407.2581638047 12578.0506152966 10979.3243847034
PWK/PhJ m 10869.1251276596 411.5678940218 11676.9473474717 10061.3029078475
WSB/EiJ f 11952.2727272727 380.4600606277 12699.0367367848 11205.5087177606
WSB/EiJ m 10747.1346153846 391.2809873526 11515.1378546186 9979.1313761506


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1283.9846682611 286.5019817095 1846.3285007294 721.6408357927
A/J both 3083.1259497082 257.6084601019 3588.7578056054 2577.494093811
C57BL/6J both 6764.0022228397 257.6084601019 7269.6340787369 6258.3703669424
C57BL/6NJ both 5604.5384615385 553.3548790127 6690.6590584097 4518.4178646673
CAST/EiJ both 10348.0545454546 355.887799055 11046.5883135465 9649.5207773626
DBA/2J both 5761.9634782608 407.6121474993 6562.0213899644 4961.9055665572
NOD/ShiLtJ both 8819.3152804643 295.9414864275 9400.1868984231 8238.4436625054
NZO/HlLtJ both 3418.2284921369 292.5998177808 3992.5411092037 2843.9158750701
PWK/PhJ both 11323.9063138298 289.5027389227 11892.1400089146 10755.672618745
WSB/EiJ both 11349.7036713287 272.8784843096 11885.3074104345 10814.0999322228




  GWAS USING LINEAR MIXED MODELS