Phenotype measure:   JaxCC1   HDL_total_ratio

ID, description, units MPD:89197   HDL_total_ratio   HDL cholesterol to total cholesterol ratio   [ratio]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 17-19wks
Procedure lipid profile
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - HDL cholesterol to total cholesterol ratio



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means0.76171   ratio 0.79933   ratio
Median of the strain means0.75411   ratio 0.778   ratio
SD of the strain means± 0.04838 ± 0.06969
Coefficient of variation (CV)0.0635 0.0872
Min–max range of strain means0.6786   –   0.88529   ratio 0.7212   –   0.95675   ratio
Mean sample size per strain5.9   mice 6.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0949 0.0949 35.5628 < 0.0001
strain 16 0.4974 0.0311 11.654 < 0.0001
sex:strain 16 0.2357 0.0147 5.5224 < 0.0001
Residuals 171 0.4561 0.0027


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 0.75771 0.02096   7 0.00792138 0.0277 0.73, 0.782 -0.08
CC002/UncJ m 0.7302 0.02231   5 0.00997697 0.0306 0.708, 0.763 -0.99
CC003/UncJ f 0.7726 0.02594   5 0.0116 0.0336 0.741, 0.801 0.23
CC003/UncJ m 0.78175 0.04078   4 0.02039 0.0522 0.736, 0.824 -0.25
CC004/TauUncJ f 0.73013 0.04442   8 0.01571 0.0608 0.646, 0.779 -0.65
CC004/TauUncJ m 0.87486 0.08686   7 0.03283 0.0993 0.779, 1.042 1.08
CC006/TauUncJ f 0.7725 0.00777817   2   0.0055 0.0101 0.767, 0.778 0.22
CC006/TauUncJ m 0.77143 0.03861   7 0.01459 0.0501 0.7, 0.815 -0.4
CC009/UncJ f 0.77283 0.02536   6 0.01035 0.0328 0.738, 0.805 0.23
CC009/UncJ m 0.78738 0.01768   8 0.00625054 0.0225 0.753, 0.802 -0.17
CC010/GeniUncJ f 0.7505 0.02985   4 0.01492 0.0398 0.718, 0.781 -0.23
CC013/GeniUncJ f 0.72929 0.01984   7 0.0074983 0.0272 0.705, 0.758 -0.67
CC013/GeniUncJ m 0.74267 0.01222   3 0.00705534 0.0165 0.732, 0.756 -0.81
CC017/UncJ f 0.701 0.04727   5 0.02114 0.0674 0.635, 0.745 -1.25
CC017/UncJ m 0.7212 0.02523   5 0.01128 0.035 0.689, 0.754 -1.12
CC018/UncJ f 0.72257 0.06853   7 0.0259 0.0948 0.629, 0.806 -0.81
CC018/UncJ m 0.778 0.058   5 0.02594 0.0746 0.712, 0.842 -0.31
CC019/TauUncJ f 0.80117 0.05107   6 0.02085 0.0637 0.763, 0.901 0.82
CC019/TauUncJ m 0.95675 0.10743   8 0.03798 0.1123 0.8, 1.082 2.26
CC024/GeniUncJ f 0.788 0.09823   6 0.0401 0.1247 0.672, 0.934 0.54
CC024/GeniUncJ m 0.747 0.02347   7 0.00887211 0.0314 0.711, 0.776 -0.75
CC025/GeniUncJ f 0.798 0.03367   4 0.01683 0.0422 0.752, 0.826 0.75
CC025/GeniUncJ m 0.75144 0.04659   9 0.01553 0.062 0.654, 0.802 -0.69
CC026/GeniUncJ f 0.82943 0.02363   7 0.00893057 0.0285 0.794, 0.859 1.4
CC026/GeniUncJ m 0.818 0.02942   7 0.01112 0.036 0.758, 0.847 0.27
CC032/GeniUncJ f 0.74717 0.01664   6 0.0067942 0.0223 0.725, 0.771 -0.3
CC032/GeniUncJ m 0.76067 0.04556   6 0.0186 0.0599 0.696, 0.813 -0.55
CC040/TauUncJ f 0.72557 0.02886   7 0.01091 0.0398 0.671, 0.76 -0.75
CC040/TauUncJ m 0.91875 0.08941   4 0.04471 0.0973 0.786, 0.973 1.71
CC041/TauUncJ f 0.88529 0.04472   7 0.0169 0.0505 0.82, 0.963 2.55
CC041/TauUncJ m 0.88125 0.09453   8 0.03342 0.1073 0.76, 0.953 1.18
CC051/TauUncJ f 0.7485 0.03065   8 0.01083 0.0409 0.708, 0.807 -0.27
CC051/TauUncJ m 0.823 0.04732   6 0.01932 0.0575 0.74, 0.879 0.34
CC068/TauUncJ f 0.6786 0.03316   5 0.01483 0.0489 0.634, 0.716 -1.72
CC068/TauUncJ m 0.74433 0.03482   3 0.0201 0.0468 0.706, 0.774 -0.79


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 0.7577 0.0195 0.7962 0.7192
CC002/UncJ m 0.7302 0.0231 0.7758 0.6846
CC003/UncJ f 0.7726 0.0231 0.8182 0.727
CC003/UncJ m 0.7817 0.0258 0.8327 0.7308
CC004/TauUncJ f 0.7301 0.0183 0.7662 0.6941
CC004/TauUncJ m 0.8749 0.0195 0.9134 0.8363
CC006/TauUncJ f 0.7725 0.0365 0.8446 0.7004
CC006/TauUncJ m 0.7714 0.0195 0.81 0.7329
CC009/UncJ f 0.7728 0.0211 0.8145 0.7312
CC009/UncJ m 0.7874 0.0183 0.8234 0.7513
CC013/GeniUncJ f 0.7293 0.0195 0.7678 0.6908
CC013/GeniUncJ m 0.7427 0.0298 0.8015 0.6838
CC017/UncJ f 0.701 0.0231 0.7466 0.6554
CC017/UncJ m 0.7212 0.0231 0.7668 0.6756
CC018/UncJ f 0.7226 0.0195 0.7611 0.684
CC018/UncJ m 0.778 0.0231 0.8236 0.7324
CC019/TauUncJ f 0.8012 0.0211 0.8428 0.7595
CC019/TauUncJ m 0.9567 0.0183 0.9928 0.9207
CC024/GeniUncJ f 0.788 0.0211 0.8296 0.7464
CC024/GeniUncJ m 0.747 0.0195 0.7855 0.7085
CC025/GeniUncJ f 0.798 0.0258 0.849 0.747
CC025/GeniUncJ m 0.7514 0.0172 0.7854 0.7175
CC026/GeniUncJ f 0.8294 0.0195 0.868 0.7909
CC026/GeniUncJ m 0.818 0.0195 0.8565 0.7795
CC032/GeniUncJ f 0.7472 0.0211 0.7888 0.7055
CC032/GeniUncJ m 0.7607 0.0211 0.8023 0.719
CC040/TauUncJ f 0.7256 0.0195 0.7641 0.687
CC040/TauUncJ m 0.9187 0.0258 0.9697 0.8678
CC041/TauUncJ f 0.8853 0.0195 0.9238 0.8468
CC041/TauUncJ m 0.8812 0.0183 0.9173 0.8452
CC051/TauUncJ f 0.7485 0.0183 0.7845 0.7125
CC051/TauUncJ m 0.823 0.0211 0.8646 0.7814
CC068/TauUncJ f 0.6786 0.0231 0.7242 0.633
CC068/TauUncJ m 0.7443 0.0298 0.8032 0.6855


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 0.744 0.0151 0.7738 0.7141
CC003/UncJ both 0.7772 0.0173 0.8114 0.743
CC004/TauUncJ both 0.8025 0.0134 0.8289 0.7761
CC006/TauUncJ both 0.772 0.0207 0.8128 0.7311
CC009/UncJ both 0.7801 0.0139 0.8076 0.7526
CC013/GeniUncJ both 0.736 0.0178 0.7712 0.7008
CC017/UncJ both 0.7111 0.0163 0.7433 0.6789
CC018/UncJ both 0.7503 0.0151 0.7801 0.7204
CC019/TauUncJ both 0.879 0.0139 0.9065 0.8514
CC024/GeniUncJ both 0.7675 0.0144 0.7959 0.7391
CC025/GeniUncJ both 0.7747 0.0155 0.8054 0.7441
CC026/GeniUncJ both 0.8237 0.0138 0.851 0.7965
CC032/GeniUncJ both 0.7539 0.0149 0.7833 0.7245
CC040/TauUncJ both 0.8222 0.0162 0.8541 0.7902
CC041/TauUncJ both 0.8833 0.0134 0.9096 0.8569
CC051/TauUncJ both 0.7857 0.0139 0.8133 0.7582
CC068/TauUncJ both 0.7115 0.0189 0.7487 0.6742




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA