Project measure / variable:   JaxCC1   HDL

ID, description, units MPD:89196   HDL   HDL cholesterol (plasma HDL)   [mg/dL]  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 17-19wks
Procedure lipid profile
Ontology mappings

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  STRAIN COMPARISON PLOT
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JaxCC1 - HDL cholesterol (plasma HDL)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means69.02   mg/dL 84.97   mg/dL
Median of the strain means63.47   mg/dL 75.33   mg/dL
SD of the strain means± 23.41 ± 24.987
Coefficient of variation (CV)0.3392 0.2941
Min–max range of strain means42.725   –   124.9   mg/dL 57.77   –   136.7   mg/dL
Mean sample size per strain6.1   mice 6.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 16721.4343 16721.4343 202.2097 < 0.0001
strain 16 111775.6185 6985.9762 84.4803 < 0.0001
sex:strain 16 5089.81 318.1131 3.8469 < 0.0001
Residuals 176 14554.0633 82.6935


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 71.54 4.1689   8 1.4739 0.0583 65.1, 78.5 0.11
CC002/UncJ m 77.73 8.8204   6 3.6009 0.1135 61.8, 87.0 -0.29
CC003/UncJ f 87.88 3.9188   5 1.7525 0.0446 81.9, 92.1 0.81
CC003/UncJ m 104.9 4.2103   4 2.1052 0.0401 101.1, 109.6 0.8
CC004/TauUncJ f 42.725 3.8644   8 1.3663 0.0904 36.4, 49.5 -1.12
CC004/TauUncJ m 68.65 10.726   8 3.7923 0.1562 53.2, 83.9 -0.65
CC006/TauUncJ f 111.7 7.9607   3 4.5961 0.0713 102.8, 118.2 1.82
CC006/TauUncJ m 116.3 22.47   7 8.4928 0.1932 81.9, 147.0 1.25
CC009/UncJ f 124.9 12.544   6 5.1209 0.1004 110.7, 143.3 2.39
CC009/UncJ m 136.7 5.6492   8 1.9973 0.0413 130.6, 143.9 2.07
CC010/GeniUncJ f 49.3 7.2778   4 3.6389 0.1476 39.5, 56.2 -0.84
CC013/GeniUncJ f 67.4 2.5671   7 0.97027 0.0381 62.6, 71.2 -0.07
CC013/GeniUncJ m 75.77 2.2189   3 1.2811 0.0293 73.3, 77.6 -0.37
CC017/UncJ f 60.58 7.3213   5 3.2742 0.1209 52.1, 67.8 -0.36
CC017/UncJ m 67.24 13.145   5 5.8785 0.1955 51.7, 81.3 -0.71
CC018/UncJ f 47.971 3.7039   7 1.4 0.0772 42.8, 53.2 -0.9
CC018/UncJ m 69.56 6.8559   5 3.066 0.0986 63.5, 80.8 -0.62
CC019/TauUncJ f 51.8 7.2716   6 2.9686 0.1404 43.0, 60.4 -0.74
CC019/TauUncJ m 72.61 6.5482   8 2.3151 0.0902 66.7, 83.8 -0.49
CC024/GeniUncJ f 63.15 7.4498   6 3.0414 0.118 57.2, 76.6 -0.25
CC024/GeniUncJ m 74.53 4.8825   7 1.8454 0.0655 69.6, 82.3 -0.42
CC025/GeniUncJ f 63.78 3.05   4 1.525 0.0478 61.7, 68.3 -0.22
CC025/GeniUncJ m 75.33 8.582   10 2.7139 0.1139 56.9, 86.8 -0.39
CC026/GeniUncJ f 65.46 9.5129   7 3.5956 0.1453 49.3, 73.9 -0.15
CC026/GeniUncJ m 69.51 7.6049   7 2.8744 0.1094 60.6, 80.8 -0.62
CC032/GeniUncJ f 58.6 9.8509   6 4.0216 0.1681 49.9, 77.1 -0.44
CC032/GeniUncJ m 59.1 5.7463   6 2.3459 0.0972 55.3, 70.4 -1.04
CC040/TauUncJ f 70.67 9.5449   7 3.6076 0.1351 50.3, 79.4 0.07
CC040/TauUncJ m 112.0 13.52   4 6.7602 0.1207 92.0, 120.9 1.08
CC041/TauUncJ f 103.1 7.396   7 2.7954 0.0717 95.1, 111.0 1.46
CC041/TauUncJ m 131.4 16.503   8 5.8349 0.1256 112.6, 154.4 1.86
CC051/TauUncJ f 58.3 4.9963   8 1.7665 0.0857 49.9, 67.3 -0.46
CC051/TauUncJ m 75.45 9.5341   6 3.8923 0.1264 65.1, 88.1 -0.38
CC068/TauUncJ f 43.44 3.1174   5 1.3941 0.0718 40.3, 48.0 -1.09
CC068/TauUncJ m 57.77 14.377   3 8.3007 0.2489 48.2, 74.3 -1.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 71.5375 3.2151 77.8826 65.1924
CC002/UncJ m 77.7333 3.7124 85.06 70.4067
CC003/UncJ f 87.88 4.0668 95.9059 79.8541
CC003/UncJ m 104.9 4.5468 113.8733 95.9267
CC004/TauUncJ f 42.725 3.2151 49.0701 36.3799
CC004/TauUncJ m 68.65 3.2151 74.9951 62.3049
CC006/TauUncJ f 111.6667 5.2502 122.0281 101.3052
CC006/TauUncJ m 116.3143 3.4371 123.0974 109.5311
CC009/UncJ f 124.9 3.7124 132.2266 117.5734
CC009/UncJ m 136.725 3.2151 143.0701 130.3799
CC013/GeniUncJ f 67.4 3.4371 74.1832 60.6168
CC013/GeniUncJ m 75.7667 5.2502 86.1281 65.4052
CC017/UncJ f 60.58 4.0668 68.6059 52.5541
CC017/UncJ m 67.24 4.0668 75.2659 59.2141
CC018/UncJ f 47.9714 3.4371 54.7546 41.1883
CC018/UncJ m 69.56 4.0668 77.5859 61.5341
CC019/TauUncJ f 51.8 3.7124 59.1266 44.4734
CC019/TauUncJ m 72.6125 3.2151 78.9576 66.2674
CC024/GeniUncJ f 63.15 3.7124 70.4766 55.8234
CC024/GeniUncJ m 74.5286 3.4371 81.3117 67.7454
CC025/GeniUncJ f 63.775 4.5468 72.7483 54.8017
CC025/GeniUncJ m 75.33 2.8756 81.0052 69.6548
CC026/GeniUncJ f 65.4571 3.4371 72.2403 58.674
CC026/GeniUncJ m 69.5143 3.4371 76.2974 62.7311
CC032/GeniUncJ f 58.6 3.7124 65.9266 51.2734
CC032/GeniUncJ m 59.1 3.7124 66.4266 51.7734
CC040/TauUncJ f 70.6714 3.4371 77.4546 63.8883
CC040/TauUncJ m 112.025 4.5468 120.9983 103.0517
CC041/TauUncJ f 103.1143 3.4371 109.8974 96.3311
CC041/TauUncJ m 131.4125 3.2151 137.7576 125.0674
CC051/TauUncJ f 58.3 3.2151 64.6451 51.9549
CC051/TauUncJ m 75.45 3.7124 82.7766 68.1234
CC068/TauUncJ f 43.44 4.0668 51.4659 35.4141
CC068/TauUncJ m 57.7667 5.2502 68.1281 47.4052


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 74.6354 2.4556 79.4815 69.7893
CC003/UncJ both 96.39 3.0501 102.4094 90.3706
CC004/TauUncJ both 55.6875 2.2734 60.1741 51.2009
CC006/TauUncJ both 113.9905 3.1376 120.1826 107.7983
CC009/UncJ both 130.8125 2.4556 135.6586 125.9664
CC013/GeniUncJ both 71.5833 3.1376 77.7755 65.3912
CC017/UncJ both 63.91 2.8756 69.5852 58.2348
CC018/UncJ both 58.7657 2.6623 64.0199 53.5115
CC019/TauUncJ both 62.2062 2.4556 67.0524 57.3601
CC024/GeniUncJ both 68.8393 2.5296 73.8315 63.847
CC025/GeniUncJ both 69.5525 2.6899 74.8612 64.2438
CC026/GeniUncJ both 67.4857 2.4304 72.2821 62.6893
CC032/GeniUncJ both 58.85 2.6251 64.0307 53.6693
CC040/TauUncJ both 91.3482 2.8499 96.9725 85.7239
CC041/TauUncJ both 117.2634 2.3532 121.9075 112.6193
CC051/TauUncJ both 66.875 2.4556 71.7211 62.0289
CC068/TauUncJ both 50.6033 3.3205 57.1565 44.0502




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA