Project measure / variable:   JaxCC1   urine_Mg

ID, description, units MPD:89152   urine_Mg   magnesium level (urine Mg)   [mg/dL]  
Data set, strains JaxCC1   CC   13 strains     sex: both     age: 12-13wks
Procedure urinalysis
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  STRAIN COMPARISON PLOT
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JaxCC1 - magnesium level (urine Mg)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains11 strains
Mean of the strain means16.88   mg/dL 17.377   mg/dL
Median of the strain means17.13   mg/dL 17.1   mg/dL
SD of the strain means± 1.5272 ± 0.86479
Coefficient of variation (CV)0.0905 0.0498
Min–max range of strain means13.227   –   20.014   mg/dL 16.657   –   19.896   mg/dL
Mean sample size per strain4.3   mice 4.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1315 0.1315 0.0405 0.8411
strain 8 24.6737 3.0842 0.9494 0.4823
sex:strain 8 31.651 3.9564 1.2178 0.3014
Residuals 71 230.6591 3.2487


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC003/UncJ f 17.205 0.06658   4 0.03329 0.0039 17.11, 17.26 0.21
CC003/UncJ m 17.067 0.18583   3 0.10729 0.0109 16.86, 17.22 -0.36
CC004/TauUncJ f 17.362 0.06648   5 0.02973 0.0038 17.28, 17.44 0.32
CC004/TauUncJ m 17.494 0.04779   8 0.0169 0.0027 17.41, 17.56 0.13
CC006/TauUncJ f 17.15 0.27653   4 0.13826 0.0161 16.78, 17.39 0.18
CC006/TauUncJ m 17.366 0.04722   5 0.02112 0.0027 17.31, 17.44 -0.01
CC009/UncJ f 16.797 0.66413   6 0.27113 0.0395 15.63, 17.39 -0.05
CC009/UncJ m 17.341 0.03796   8 0.01342 0.0022 17.3, 17.4 -0.04
CC010/GeniUncJ f 17.223 0.1493   4 0.07465 0.0087 17.0, 17.32 0.22
CC013/GeniUncJ f 17.11 0.16643   3 0.09609 0.0097 16.92, 17.23 0.15
CC013/GeniUncJ m 17.087 0.16419   4 0.08209 0.0096 16.92, 17.31 -0.34
CC017/UncJ f 16.61 0.0   1   0.0 0.0 16.61, 16.61 -0.18
CC017/UncJ m 19.896 7.348   5 3.2861 0.3693 16.55, 33.04 2.91
CC018/UncJ f 16.956 0.23021   7 0.08701 0.0136 16.46, 17.15 0.05
CC018/UncJ m 16.657 0.06506   3 0.03756 0.0039 16.59, 16.72 -0.83
CC025/GeniUncJ f 20.014 7.187   5 3.2141 0.3591 16.71, 32.87 2.05
CC025/GeniUncJ m 16.94 0.24454   6 0.09983 0.0144 16.64, 17.24 -0.51
CC026/GeniUncJ m 17.107 0.4477   3 0.25848 0.0262 16.59, 17.38 -0.31
CC032/GeniUncJ f 13.227 8.2721   4 4.136 0.6254 0.82, 17.46 -2.39
CC051/TauUncJ f 17.303 0.29579   4 0.14789 0.0171 16.87, 17.52 0.28
CC051/TauUncJ m 17.096 0.33931   5 0.15174 0.0198 16.58, 17.41 -0.33
CC068/TauUncJ f 15.598 2.2346   5 0.99935 0.1433 11.62, 16.92 -0.84
CC068/TauUncJ m 17.1 0.08165   4 0.04082 0.0048 17.0, 17.2 -0.32


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC003/UncJ f 17.205 0.9012 19.002 15.408
CC003/UncJ m 17.0667 1.0406 19.1416 14.9917
CC004/TauUncJ f 17.362 0.8061 18.9693 15.7547
CC004/TauUncJ m 17.4938 0.6373 18.7644 16.2231
CC006/TauUncJ f 17.15 0.9012 18.947 15.353
CC006/TauUncJ m 17.366 0.8061 18.9733 15.7587
CC009/UncJ f 16.7967 0.7358 18.2639 15.3295
CC009/UncJ m 17.3413 0.6373 18.6119 16.0706
CC013/GeniUncJ f 17.11 1.0406 19.185 15.035
CC013/GeniUncJ m 17.0875 0.9012 18.8845 15.2905
CC018/UncJ f 16.9557 0.6813 18.3141 15.5973
CC018/UncJ m 16.6567 1.0406 18.7316 14.5817
CC025/GeniUncJ f 20.014 0.8061 21.6213 18.4067
CC025/GeniUncJ m 16.94 0.7358 18.4072 15.4728
CC051/TauUncJ f 17.3025 0.9012 19.0995 15.5055
CC051/TauUncJ m 17.096 0.8061 18.7033 15.4887
CC068/TauUncJ f 15.598 0.8061 17.2053 13.9907
CC068/TauUncJ m 17.1 0.9012 18.897 15.303


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC003/UncJ both 17.1358 0.6883 18.5083 15.7634
CC004/TauUncJ both 17.4279 0.5138 18.4523 16.4034
CC006/TauUncJ both 17.258 0.6046 18.4634 16.0526
CC009/UncJ both 17.069 0.4867 18.0394 16.0985
CC013/GeniUncJ both 17.0988 0.6883 18.4712 15.7263
CC018/UncJ both 16.8062 0.6219 18.0462 15.5662
CC025/GeniUncJ both 18.477 0.5457 19.5651 17.3889
CC051/TauUncJ both 17.1993 0.6046 18.4047 15.9938
CC068/TauUncJ both 16.349 0.6046 17.5544 15.1436




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA