Phenotype measure:   JaxCC1   learn_slope_rota

ID, description, units MPD:89143   learn_slope_rota   learning slope on accelerating rotarod (4-40 rpm/5 min) over 5 trials  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 10-12wks
Procedure rotarod
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - learning slope on accelerating rotarod (4-40 rpm/5 min) over 5 trials



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means12.325   None 10.465   None
Median of the strain means10.148   None 9.95   None
SD of the strain means± 8.7155 ± 7.3357
Coefficient of variation (CV)0.7071 0.701
Min–max range of strain means-0.3625   –   27.883   None 0.88571   –   30.738   None
Mean sample size per strain6.7   mice 7.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 349.4934 349.4934 2.2906 0.1317
strain 16 12393.9886 774.6243 5.0769 < 0.0001
sex:strain 16 2203.2229 137.7014 0.9025 0.5671
Residuals 208 31736.4472 152.5791


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 3.9571 22.377   7 8.4577 5.6549 -41.6, 21.9 -0.96
CC002/UncJ m 0.88571 13.012   7 4.918 14.6908 -16.1, 23.3 -1.31
CC003/UncJ f 21.1 11.342   5 5.0725 0.5376 11.0, 38.4 1.01
CC003/UncJ m 13.45 17.252   4 8.6261 1.2827 -9.5, 31.9 0.41
CC004/TauUncJ f 9.65 22.579   8 7.983 2.3398 -31.8, 45.9 -0.31
CC004/TauUncJ m 5.1625 9.3436   8 3.3035 1.8099 -9.9, 16.1 -0.72
CC006/TauUncJ f 2.375 2.4703   4 1.2352 1.0401 -0.1, 5.5 -1.14
CC006/TauUncJ m 1.9625 5.0855   8 1.798 2.5914 -7.9, 6.9 -1.16
CC009/UncJ f 6.0125 8.0003   8 2.8285 1.3306 -4.0, 20.0 -0.72
CC009/UncJ m 10.25 9.2054   8 3.2546 0.8981 0.2, 26.2 -0.03
CC010/GeniUncJ f 9.24 4.4309   5 1.9816 0.4795 4.8, 14.9 -0.35
CC013/GeniUncJ f 24.238 13.855   8 4.8985 0.5716 2.6, 43.7 1.37
CC013/GeniUncJ m 18.65 7.8318   4 3.9159 0.4199 7.4, 24.6 1.12
CC017/UncJ f 27.883 17.531   6 7.1569 0.6287 3.1, 57.4 1.79
CC017/UncJ m 19.9 13.137   5 5.875 0.6601 1.3, 35.2 1.29
CC018/UncJ f 1.5143 2.6941   7 1.0183 1.7791 -1.4, 5.5 -1.24
CC018/UncJ m 4.55 3.2811   8 1.16 0.7211 0.8, 9.2 -0.81
CC019/TauUncJ f 14.9 10.553   7 3.9886 0.7082 -0.9, 27.6 0.3
CC019/TauUncJ m 11.125 15.355   8 5.4288 1.3802 -15.8, 35.6 0.09
CC024/GeniUncJ f 12.657 10.549   7 3.9872 0.8334 -2.5, 23.6 0.04
CC024/GeniUncJ m 7.6857 21.391   7 8.0852 2.7833 -12.0, 47.0 -0.38
CC025/GeniUncJ f 9.82 12.851   5 5.7469 1.3086 -5.9, 25.8 -0.29
CC025/GeniUncJ m 7.29 7.6208   10 2.4099 1.0454 -1.1, 19.3 -0.43
CC026/GeniUncJ f 21.825 21.247   8 7.5119 0.9735 -14.2, 54.5 1.09
CC026/GeniUncJ m 30.738 11.283   8 3.9891 0.3671 14.9, 45.7 2.76
CC032/GeniUncJ f 5.6 7.4944   7 2.8326 1.3383 -3.8, 14.8 -0.77
CC032/GeniUncJ m 11.588 6.3256   8 2.2364 0.5459 3.0, 23.0 0.15
CC040/TauUncJ f 15.912 14.235   8 5.0327 0.8945 -8.1, 35.0 0.41
CC040/TauUncJ m 11.886 8.8264   7 3.3361 0.7426 3.9, 29.6 0.19
CC041/TauUncJ f -0.3625 3.5375   8 1.2507 -9.7587 -3.9, 6.8 -1.46
CC041/TauUncJ m 5.125 4.0085   8 1.4172 0.7821 -2.0, 10.3 -0.73
CC051/TauUncJ f 10.475 12.375   8 4.3753 1.1814 -5.2, 31.6 -0.21
CC051/TauUncJ m 9.95 13.507   10 4.2712 1.3575 -10.0, 40.9 -0.07
CC068/TauUncJ f 25.06 10.929   5 4.8878 0.4361 11.8, 36.0 1.46
CC068/TauUncJ m 7.7125 4.6872   8 1.6572 0.6077 -0.2, 14.5 -0.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 3.9571 4.6687 13.1612 -5.2469
CC002/UncJ m 0.8857 4.6687 10.0898 -8.3184
CC003/UncJ f 21.1 5.5241 31.9904 10.2096
CC003/UncJ m 13.45 6.1761 25.6259 1.2741
CC004/TauUncJ f 9.65 4.3672 18.2596 1.0404
CC004/TauUncJ m 5.1625 4.3672 13.7721 -3.4471
CC006/TauUncJ f 2.375 6.1761 14.5509 -9.8009
CC006/TauUncJ m 1.9625 4.3672 10.5721 -6.6471
CC009/UncJ f 6.0125 4.3672 14.6221 -2.5971
CC009/UncJ m 10.25 4.3672 18.8596 1.6404
CC013/GeniUncJ f 24.2375 4.3672 32.8471 15.6279
CC013/GeniUncJ m 18.65 6.1761 30.8259 6.4741
CC017/UncJ f 27.8833 5.0428 37.8249 17.9418
CC017/UncJ m 19.9 5.5241 30.7904 9.0096
CC018/UncJ f 1.5143 4.6687 10.7184 -7.6898
CC018/UncJ m 4.55 4.3672 13.1596 -4.0596
CC019/TauUncJ f 14.9 4.6687 24.1041 5.6959
CC019/TauUncJ m 11.125 4.3672 19.7346 2.5154
CC024/GeniUncJ f 12.6571 4.6687 21.8612 3.4531
CC024/GeniUncJ m 7.6857 4.6687 16.8898 -1.5184
CC025/GeniUncJ f 9.82 5.5241 20.7104 -1.0704
CC025/GeniUncJ m 7.29 3.9061 14.9907 -0.4107
CC026/GeniUncJ f 21.825 4.3672 30.4346 13.2154
CC026/GeniUncJ m 30.7375 4.3672 39.3471 22.1279
CC032/GeniUncJ f 5.6 4.6687 14.8041 -3.6041
CC032/GeniUncJ m 11.5875 4.3672 20.1971 2.9779
CC040/TauUncJ f 15.9125 4.3672 24.5221 7.3029
CC040/TauUncJ m 11.8857 4.6687 21.0898 2.6816
CC041/TauUncJ f -0.3625 4.3672 8.2471 -8.9721
CC041/TauUncJ m 5.125 4.3672 13.7346 -3.4846
CC051/TauUncJ f 10.475 4.3672 19.0846 1.8654
CC051/TauUncJ m 9.95 3.9061 17.6507 2.2493
CC068/TauUncJ f 25.06 5.5241 35.9504 14.1696
CC068/TauUncJ m 7.7125 4.3672 16.3221 -0.8971


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 2.4214 3.3013 8.9297 -4.0868
CC003/UncJ both 17.275 4.1431 25.4428 9.1072
CC004/TauUncJ both 7.4063 3.0881 13.4942 1.3183
CC006/TauUncJ both 2.1688 3.7821 9.6249 -5.2874
CC009/UncJ both 8.1313 3.0881 14.2192 2.0433
CC013/GeniUncJ both 21.4438 3.7821 28.8999 13.9876
CC017/UncJ both 23.8917 3.7398 31.2645 16.5188
CC018/UncJ both 3.0321 3.1965 9.3338 -3.2695
CC019/TauUncJ both 13.0125 3.1965 19.3141 6.7109
CC024/GeniUncJ both 10.1714 3.3013 16.6797 3.6632
CC025/GeniUncJ both 8.555 3.3828 15.224 1.886
CC026/GeniUncJ both 26.2812 3.0881 32.3692 20.1933
CC032/GeniUncJ both 8.5938 3.1965 14.8954 2.2921
CC040/TauUncJ both 13.8991 3.1965 20.2007 7.5975
CC041/TauUncJ both 2.3813 3.0881 8.4692 -3.7067
CC051/TauUncJ both 10.2125 2.9296 15.988 4.437
CC068/TauUncJ both 16.3862 3.5209 23.3276 9.4449




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA