Phenotype measure:   JaxCC1   learn_diff_rota

ID, description, units MPD:89142   learn_diff_rota   learning difference on accelerating rotarod (4-40 rpm/5 min) over 5 trials   [s]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 10-12wks
Procedure rotarod
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - learning difference on accelerating rotarod (4-40 rpm/5 min) over 5 trials



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means36.026   s 31.644   s
Median of the strain means34.379   s 31.625   s
SD of the strain means± 28.319 ± 22.353
Coefficient of variation (CV)0.7861 0.7064
Min–max range of strain means0.25   –   82.25   s -0.92857   –   95.31   s
Mean sample size per strain6.8   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1432.0032 1432.0032 0.9714 0.3255
strain 16 124534.5872 7783.4117 5.2801 < 0.0001
sex:strain 16 25343.2389 1583.9524 1.0745 0.3812
Residuals 211 311038.1196 1474.1143


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 0.75 60.09   8 21.245 80.1198 -130.5, 53.0 -1.25
CC002/UncJ m -0.92857 35.723   7 13.502 -38.4707 -50.5, 47.5 -1.46
CC003/UncJ f 68.5 45.912   5 20.532 0.6702 26.0, 140.0 1.15
CC003/UncJ m 39.25 75.86   4 37.931 1.9328 -65.5, 115.5 0.34
CC004/TauUncJ f 35.643 63.01   7 23.814 1.7677 -73.5, 124.0 -0.01
CC004/TauUncJ m 20.188 37.007   8 13.084 1.8331 -39.5, 65.0 -0.51
CC006/TauUncJ f 8.75 10.836   4 5.4179 1.2384 -4.0, 22.5 -0.96
CC006/TauUncJ m 3.5625 20.113   8 7.111 5.6457 -36.0, 23.5 -1.26
CC009/UncJ f 12.375 23.02   8 8.1387 1.8602 -20.0, 45.5 -0.84
CC009/UncJ m 31.625 28.949   8 10.235 0.9154 -0.5, 82.0 0.0
CC010/GeniUncJ f 23.4 19.92   5 8.9084 0.8513 4.5, 45.5 -0.45
CC013/GeniUncJ f 69.38 47.065   8 16.64 0.6784 10.0, 141.5 1.18
CC013/GeniUncJ m 61.25 22.798   4 11.399 0.3722 28.5, 78.0 1.32
CC017/UncJ f 82.25 70.57   6 28.81 0.858 -28.0, 191.0 1.63
CC017/UncJ m 44.1 40.115   5 17.94 0.9096 7.5, 88.0 0.56
CC018/UncJ f 2.0625 7.2182   8 2.552 3.4997 -5.5, 15.0 -1.2
CC018/UncJ m 15.125 9.9991   8 3.5352 0.6611 2.0, 28.5 -0.74
CC019/TauUncJ f 37.0 37.625   7 14.221 1.0169 -10.0, 83.5 0.03
CC019/TauUncJ m 34.938 44.702   8 15.804 1.2795 -43.5, 104.0 0.15
CC024/GeniUncJ f 34.857 30.692   7 11.6 0.8805 -6.0, 76.5 -0.04
CC024/GeniUncJ m 26.625 65.37   8 23.112 2.4553 -28.0, 154.5 -0.22
CC025/GeniUncJ f 33.9 32.834   5 14.684 0.9685 -6.0, 80.0 -0.08
CC025/GeniUncJ m 20.25 20.223   10 6.395 0.9987 -3.0, 60.5 -0.51
CC026/GeniUncJ f 74.31 60.11   8 21.252 0.8089 -14.0, 176.0 1.35
CC026/GeniUncJ m 95.31 36.367   8 12.858 0.3816 30.0, 141.0 2.85
CC032/GeniUncJ f 15.562 20.09   8 7.1028 1.2909 -8.0, 44.5 -0.72
CC032/GeniUncJ m 36.188 17.296   8 6.1149 0.4779 6.5, 66.5 0.2
CC040/TauUncJ f 45.562 42.062   8 14.871 0.9232 -8.0, 104.5 0.34
CC040/TauUncJ m 37.286 26.733   7 10.104 0.717 19.5, 95.5 0.25
CC041/TauUncJ f 0.25 9.3694   8 3.3126 37.4776 -10.5, 18.5 -1.26
CC041/TauUncJ m 14.625 12.758   8 4.5107 0.8723 -9.0, 26.5 -0.76
CC051/TauUncJ f 22.812 43.727   8 15.46 1.9168 -50.0, 85.0 -0.47
CC051/TauUncJ m 35.55 39.535   10 12.502 1.1121 -3.0, 131.0 0.17
CC068/TauUncJ f 81.1 33.56   5 15.009 0.4138 44.0, 116.5 1.59
CC068/TauUncJ m 23.0 11.247   8 3.9765 0.489 9.5, 38.0 -0.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 0.75 13.5744 27.5088 -26.0088
CC002/UncJ m -0.9286 14.5116 27.6778 -29.5349
CC003/UncJ f 68.5 17.1704 102.3475 34.6525
CC003/UncJ m 39.25 19.1971 77.0927 1.4073
CC004/TauUncJ f 35.6429 14.5116 64.2492 7.0365
CC004/TauUncJ m 20.1875 13.5744 46.9463 -6.5713
CC006/TauUncJ f 8.75 19.1971 46.5927 -29.0927
CC006/TauUncJ m 3.5625 13.5744 30.3213 -23.1963
CC009/UncJ f 12.375 13.5744 39.1338 -14.3838
CC009/UncJ m 31.625 13.5744 58.3838 4.8662
CC013/GeniUncJ f 69.375 13.5744 96.1338 42.6162
CC013/GeniUncJ m 61.25 19.1971 99.0927 23.4073
CC017/UncJ f 82.25 15.6744 113.1484 51.3516
CC017/UncJ m 44.1 17.1704 77.9475 10.2525
CC018/UncJ f 2.0625 13.5744 28.8213 -24.6963
CC018/UncJ m 15.125 13.5744 41.8838 -11.6338
CC019/TauUncJ f 37.0 14.5116 65.6064 8.3936
CC019/TauUncJ m 34.9375 13.5744 61.6963 8.1787
CC024/GeniUncJ f 34.8571 14.5116 63.4635 6.2508
CC024/GeniUncJ m 26.625 13.5744 53.3838 -0.1338
CC025/GeniUncJ f 33.9 17.1704 67.7475 0.0525
CC025/GeniUncJ m 20.25 12.1413 44.1838 -3.6838
CC026/GeniUncJ f 74.3125 13.5744 101.0713 47.5537
CC026/GeniUncJ m 95.3125 13.5744 122.0713 68.5537
CC032/GeniUncJ f 15.5625 13.5744 42.3213 -11.1963
CC032/GeniUncJ m 36.1875 13.5744 62.9463 9.4287
CC040/TauUncJ f 45.5625 13.5744 72.3213 18.8037
CC040/TauUncJ m 37.2857 14.5116 65.8921 8.6793
CC041/TauUncJ f 0.25 13.5744 27.0088 -26.5088
CC041/TauUncJ m 14.625 13.5744 41.3838 -12.1338
CC051/TauUncJ f 22.8125 13.5744 49.5713 -3.9463
CC051/TauUncJ m 35.55 12.1413 59.4838 11.6162
CC068/TauUncJ f 81.1 17.1704 114.9475 47.2525
CC068/TauUncJ m 23.0 13.5744 49.7588 -3.7588


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both -0.0893 9.9354 19.4962 -19.6747
CC003/UncJ both 53.875 12.8778 79.2606 28.4894
CC004/TauUncJ both 27.9152 9.9354 47.5006 8.3297
CC006/TauUncJ both 6.1562 11.7558 29.3301 -17.0176
CC009/UncJ both 22.0 9.5985 40.9213 3.0787
CC013/GeniUncJ both 65.3125 11.7558 88.4863 42.1387
CC017/UncJ both 63.175 11.6244 86.0899 40.2601
CC018/UncJ both 8.5937 9.5985 27.5151 -10.3276
CC019/TauUncJ both 35.9687 9.9354 55.5542 16.3833
CC024/GeniUncJ both 30.7411 9.9354 50.3265 11.1556
CC025/GeniUncJ both 27.075 10.5147 47.8023 6.3477
CC026/GeniUncJ both 84.8125 9.5985 103.7338 65.8912
CC032/GeniUncJ both 25.875 9.5985 44.7963 6.9537
CC040/TauUncJ both 41.4241 9.9354 61.0096 21.8387
CC041/TauUncJ both 7.4375 9.5985 26.3588 -11.4838
CC051/TauUncJ both 29.1812 9.106 47.1316 11.2309
CC068/TauUncJ both 52.05 10.944 73.6236 30.4764




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA