Phenotype measure:   JaxCC1   hole_pokes


  STRAIN COMPARISON PLOT
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JaxCC1 - number of hole pokes, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested5 strains6 strains
Mean of the strain means33.826   n 25.983   n
Median of the strain means38.8   n 26.5   n
SD of the strain means± 15.175 ± 9.3119
Coefficient of variation (CV)0.4486 0.3584
Min–max range of strain means10.667   –   51.33   n 12.5   –   38.2   n
Mean sample size per strain4.6   mice 5.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.2621 0.2621 0.0016 0.9679
strain 3 1685.1967 561.7322 3.5293 0.0247
sex:strain 3 740.2599 246.7533 1.5503 0.2188
Residuals 35 5570.7 159.1629


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC004/TauUncJ f 51.33 16.653   3 9.6148 0.3244 38.0, 70.0 1.15
CC013/GeniUncJ f 10.667 3.0551   3 1.7638 0.2864 8.0, 14.0 -1.53
CC013/GeniUncJ m 25.75 15.5   4 7.75 0.6019 13.0, 48.0 -0.03
CC017/UncJ f 39.333 9.1141   6 3.7208 0.2317 26.0, 52.0 0.36
CC017/UncJ m 38.2 8.5264   5 3.8131 0.2232 25.0, 47.0 1.31
CC024/GeniUncJ m 19.0 9.3005   5 4.1593 0.4895 11.0, 34.0 -0.75
CC025/GeniUncJ f 29.0 15.258   6 6.229 0.5261 12.0, 51.0 -0.32
CC025/GeniUncJ m 33.2 14.551   10 4.6014 0.4383 15.0, 56.0 0.77
CC051/TauUncJ m 12.5 4.9497   2   3.5 0.396 9.0, 16.0 -1.45
CC068/TauUncJ f 38.8 8.7006   5 3.891 0.2242 27.0, 50.0 0.33
CC068/TauUncJ m 27.25 15.84   4 7.9202 0.5813 15.0, 49.0 0.14


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC013/GeniUncJ f 10.6667 7.2838 25.4536 -4.1203
CC013/GeniUncJ m 25.75 6.308 38.5559 12.9441
CC017/UncJ f 39.3333 5.1505 49.7893 28.8774
CC017/UncJ m 38.2 5.642 49.6539 26.7461
CC025/GeniUncJ f 29.0 5.1505 39.456 18.544
CC025/GeniUncJ m 33.2 3.9895 41.2992 25.1008
CC068/TauUncJ f 38.8 5.642 50.2539 27.3461
CC068/TauUncJ m 27.25 6.308 40.0559 14.4441


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC013/GeniUncJ both 18.2083 4.8178 27.989 8.4277
CC017/UncJ both 38.7667 3.8197 46.521 31.0123
CC025/GeniUncJ both 31.1 3.2574 37.7129 24.4871
CC068/TauUncJ both 33.025 4.2315 41.6155 24.4345




GWAS analysis not available: At least 8 strains are required