Project measure / variable:   JaxCC1   pip_6

ID, description, units MPD:89047   pip_6   auditory brainstem response (ABR) threshold, sound pressure level   [dB]  6 kHz pip  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 15-17wks
Procedure ABR test
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  STRAIN COMPARISON PLOT
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JaxCC1 - auditory brainstem response (ABR) threshold, sound pressure level 6 kHz pip



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means63.36   dB 67.43   dB
Median of the strain means57.71   dB 62.5   dB
SD of the strain means± 16.56 ± 18.81
Coefficient of variation (CV)0.2614 0.279
Min–max range of strain means45.0   –   100.0   dB 45.0   –   100.0   dB
Mean sample size per strain3.2   mice 3.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 193.3336 193.3336 1.6072 0.2087
strain 16 29157.2849 1822.3303 15.1492 < 0.0001
sex:strain 16 1266.6112 79.1632 0.6581 0.8252
Residuals 77 9262.5 120.2922


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 53.75 2.5   4 1.25 0.0465 50.0, 55.0 -0.58
CC002/UncJ m 60.0 10.0   3 5.7735 0.1667 50.0, 70.0 -0.39
CC003/UncJ f 58.75 6.2915   4 3.1458 0.1071 50.0, 65.0 -0.28
CC003/UncJ m 70.0 8.6603   3 5.0 0.1237 60.0, 75.0 0.14
CC004/TauUncJ f 67.5 2.8868   4 1.4434 0.0428 65.0, 70.0 0.25
CC004/TauUncJ m 71.25 4.7871   4 2.3936 0.0672 65.0, 75.0 0.2
CC006/TauUncJ f 77.5 31.82   2   22.5 0.4106 55.0, 100.0 0.85
CC006/TauUncJ m 81.25 23.936   4 11.968 0.2946 50.0, 100.0 0.73
CC009/UncJ f 75.0 18.708   4 9.3541 0.2494 55.0, 100.0 0.7
CC009/UncJ m 88.75 22.5   4 11.25 0.2535 55.0, 100.0 1.13
CC010/GeniUncJ f 45.0 7.0711   2   5.0 0.1571 40.0, 50.0 -1.11
CC013/GeniUncJ f 100.0 0.0   3 0.0 0.0 100.0, 100.0 2.21
CC013/GeniUncJ m 95.0 7.0711   2   5.0 0.0744 90.0, 100.0 1.47
CC017/UncJ f 50.0 8.6603   3 5.0 0.1732 40.0, 55.0 -0.81
CC017/UncJ m 50.0 0.0   2   0.0 0.0 50.0, 50.0 -0.93
CC018/UncJ f 56.67 11.547   3 6.6667 0.2038 50.0, 70.0 -0.4
CC018/UncJ m 47.5 3.5355   2   2.5 0.0744 45.0, 50.0 -1.06
CC019/TauUncJ f 48.333 5.7735   3 3.3333 0.1195 45.0, 55.0 -0.91
CC019/TauUncJ m 53.75 4.7871   4 2.3936 0.0891 50.0, 60.0 -0.73
CC024/GeniUncJ f 51.67 5.7735   3 3.3333 0.1117 45.0, 55.0 -0.71
CC024/GeniUncJ m 53.75 8.5391   4 4.2696 0.1589 45.0, 65.0 -0.73
CC025/GeniUncJ f 60.0 0.0   2   0.0 0.0 60.0, 60.0 -0.2
CC025/GeniUncJ m 72.5 11.902   4 5.9512 0.1642 55.0, 80.0 0.27
CC026/GeniUncJ f 55.0 0.0   3 0.0 0.0 55.0, 55.0 -0.5
CC026/GeniUncJ m 51.25 4.7871   4 2.3936 0.0934 45.0, 55.0 -0.86
CC032/GeniUncJ f 92.5 9.5743   4 4.7871 0.1035 80.0, 100.0 1.76
CC032/GeniUncJ m 96.25 4.7871   4 2.3936 0.0497 90.0, 100.0 1.53
CC040/TauUncJ f 85.0 17.795   4 8.8976 0.2094 65.0, 100.0 1.31
CC040/TauUncJ m 100.0 0.0   2   0.0 0.0 100.0, 100.0 1.73
CC041/TauUncJ f 68.75 11.087   4 5.5434 0.1613 60.0, 85.0 0.33
CC041/TauUncJ m 62.5 2.8868   4 1.4434 0.0462 60.0, 65.0 -0.26
CC051/TauUncJ f 47.5 9.5743   4 4.7871 0.2016 35.0, 55.0 -0.96
CC051/TauUncJ m 45.0 0.0   3 0.0 0.0 45.0, 45.0 -1.19
CC068/TauUncJ f 47.5 3.5355   2   2.5 0.0744 45.0, 50.0 -0.96
CC068/TauUncJ m 47.5 3.5355   2   2.5 0.0744 45.0, 50.0 -1.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 53.75 5.4839 64.6698 42.8302
CC002/UncJ m 60.0 6.3323 72.6091 47.3909
CC003/UncJ f 58.75 5.4839 69.6698 47.8302
CC003/UncJ m 70.0 6.3323 82.6091 57.3909
CC004/TauUncJ f 67.5 5.4839 78.4198 56.5802
CC004/TauUncJ m 71.25 5.4839 82.1698 60.3302
CC006/TauUncJ f 77.5 7.7554 92.943 62.057
CC006/TauUncJ m 81.25 5.4839 92.1698 70.3302
CC009/UncJ f 75.0 5.4839 85.9198 64.0802
CC009/UncJ m 88.75 5.4839 99.6698 77.8302
CC013/GeniUncJ f 100.0 6.3323 112.6091 87.3909
CC013/GeniUncJ m 95.0 7.7554 110.443 79.557
CC017/UncJ f 50.0 6.3323 62.6091 37.3909
CC017/UncJ m 50.0 7.7554 65.443 34.557
CC018/UncJ f 56.6667 6.3323 69.2758 44.0575
CC018/UncJ m 47.5 7.7554 62.943 32.057
CC019/TauUncJ f 48.3333 6.3323 60.9425 35.7242
CC019/TauUncJ m 53.75 5.4839 64.6698 42.8302
CC024/GeniUncJ f 51.6667 6.3323 64.2758 39.0575
CC024/GeniUncJ m 53.75 5.4839 64.6698 42.8302
CC025/GeniUncJ f 60.0 7.7554 75.443 44.557
CC025/GeniUncJ m 72.5 5.4839 83.4198 61.5802
CC026/GeniUncJ f 55.0 6.3323 67.6091 42.3909
CC026/GeniUncJ m 51.25 5.4839 62.1698 40.3302
CC032/GeniUncJ f 92.5 5.4839 103.4198 81.5802
CC032/GeniUncJ m 96.25 5.4839 107.1698 85.3302
CC040/TauUncJ f 85.0 5.4839 95.9198 74.0802
CC040/TauUncJ m 100.0 7.7554 115.443 84.557
CC041/TauUncJ f 68.75 5.4839 79.6698 57.8302
CC041/TauUncJ m 62.5 5.4839 73.4198 51.5802
CC051/TauUncJ f 47.5 5.4839 58.4198 36.5802
CC051/TauUncJ m 45.0 6.3323 57.6091 32.3909
CC068/TauUncJ f 47.5 7.7554 62.943 32.057
CC068/TauUncJ m 47.5 7.7554 62.943 32.057


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 56.875 4.1884 65.2152 48.5348
CC003/UncJ both 64.375 4.1884 72.7152 56.0348
CC004/TauUncJ both 69.375 3.8777 77.0965 61.6535
CC006/TauUncJ both 79.375 4.7492 88.8318 69.9182
CC009/UncJ both 81.875 3.8777 89.5965 74.1535
CC013/GeniUncJ both 97.5 5.0061 107.4684 87.5316
CC017/UncJ both 50.0 5.0061 59.9684 40.0316
CC018/UncJ both 52.0833 5.0061 62.0517 42.1149
CC019/TauUncJ both 51.0417 4.1884 59.3818 42.7015
CC024/GeniUncJ both 52.7083 4.1884 61.0485 44.3682
CC025/GeniUncJ both 66.25 4.7492 75.7068 56.7932
CC026/GeniUncJ both 53.125 4.1884 61.4652 44.7848
CC032/GeniUncJ both 94.375 3.8777 102.0965 86.6535
CC040/TauUncJ both 92.5 4.7492 101.9568 83.0432
CC041/TauUncJ both 65.625 3.8777 73.3465 57.9035
CC051/TauUncJ both 46.25 4.1884 54.5902 37.9098
CC068/TauUncJ both 47.5 5.4839 58.4198 36.5802




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA