Phenotype measure:   Neuner1   Ymaze_ent_10mo

ID, description, units MPD:65934   Ymaze_ent_10mo   number of arm entries in Y-maze   [n]  10 mo
Data set, strains Neuner1   F1 AD-BXD   32 strains     sex: both     age: 8-65wks
Procedure Y-maze
Ontology mappings

  STRAIN COMPARISON PLOT
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Neuner1 - number of arm entries in Y-maze 10 mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested29 strains8 strains
Mean of the strain means26.957   n 23.448   n
Median of the strain means25.0   n 22.5   n
SD of the strain means± 9.094 ± 7.0675
Coefficient of variation (CV)0.3374 0.3014
Min–max range of strain means14.75   –   53.0   n 13.0   –   38.5   n
Mean sample size per strain3.5   mice 2.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.7705 4.7705 0.0996 0.7555
strain 2 1122.4401 561.2201 11.7215 0.0004
sex:strain 2 491.8539 245.927 5.1364 0.0158
Residuals 20 957.5893 47.8795


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x B6)F1-ADtg m 25.333 4.0415   3 2.3333 0.1595 23.0, 30.0 0.27
(B6.5XFAD x B6)F1-Ntg f 37.0 0.0   1   0.0 0.0 37.0, 37.0 1.1
(B6.5XFAD x B6)F1-Ntg m 22.5 2.1213   2   1.5 0.0943 21.0, 24.0 -0.13
(B6.5XFAD x BXD100)F1-ADtg m 13.0 7.0711   2   5.0 0.5439 8.0, 18.0 -1.48
(B6.5XFAD x BXD14)F1-ADtg f 26.0 0.0   1   0.0 0.0 26.0, 26.0 -0.11
(B6.5XFAD x BXD14)F1-Ntg f 23.5 12.021   2   8.5 0.5115 15.0, 32.0 -0.38
(B6.5XFAD x BXD16)F1-ADtg f 14.75 5.1235   4 2.5617 0.3474 8.0, 20.0 -1.34
(B6.5XFAD x BXD22)F1-ADtg f 40.5 33.234   2   23.5 0.8206 17.0, 64.0 1.49
(B6.5XFAD x BXD22)F1-Ntg f 17.667 7.5056   3 4.3333 0.4248 10.0, 25.0 -1.02
(B6.5XFAD x BXD2)F1-ADtg f 21.25 4.6458   4 2.3229 0.2186 17.0, 27.0 -0.63
(B6.5XFAD x BXD2)F1-Ntg f 25.0 0.0   1   0.0 0.0 25.0, 25.0 -0.22
(B6.5XFAD x BXD34)F1-ADtg f 33.0 7.0711   2   5.0 0.2143 28.0, 38.0 0.66
(B6.5XFAD x BXD34)F1-Ntg f 29.0 0.0   1   0.0 0.0 29.0, 29.0 0.22
(B6.5XFAD x BXD42)F1-ADtg f 20.333 4.5092   3 2.6034 0.2218 16.0, 25.0 -0.73
(B6.5XFAD x BXD42)F1-Ntg f 42.0 0.0   1   0.0 0.0 42.0, 42.0 1.65
(B6.5XFAD x BXD44)F1-ADtg f 16.0 5.244   5 2.3452 0.3278 11.0, 23.0 -1.2
(B6.5XFAD x BXD44)F1-ADtg m 21.0 2.8284   2   2.0 0.1347 19.0, 23.0 -0.35
(B6.5XFAD x BXD51)F1-ADtg f 22.25 5.3151   4 2.6575 0.2389 18.0, 30.0 -0.52
(B6.5XFAD x BXD51)F1-Ntg f 33.75 8.7321   4 4.3661 0.2587 22.0, 43.0 0.75
(B6.5XFAD x BXD55)F1-ADtg f 29.75 7.6322   4 3.8161 0.2565 23.0, 40.0 0.31
(B6.5XFAD x BXD55)F1-Ntg f 21.0 2.8284   2   2.0 0.1347 19.0, 23.0 -0.66
(B6.5XFAD x BXD65)F1-ADtg f 36.571 5.0943   7 1.9255 0.1393 32.0, 46.0 1.06
(B6.5XFAD x BXD65)F1-ADtg m 22.5 3.5355   2   2.5 0.1571 20.0, 25.0 -0.13
(B6.5XFAD x BXD65)F1-Ntg f 28.875 8.6757   8 3.0673 0.3005 17.0, 44.0 0.21
(B6.5XFAD x BXD65)F1-Ntg m 38.5 12.021   2   8.5 0.3122 30.0, 47.0 2.13
(B6.5XFAD x BXD68)F1-ADtg m 22.75 3.304   4 1.652 0.1452 19.0, 27.0 -0.1
(B6.5XFAD x BXD68)F1-Ntg f 16.5 4.4159   6 1.8028 0.2676 12.0, 25.0 -1.15
(B6.5XFAD x BXD68)F1-Ntg m 22.0 0.0   1   0.0 0.0 22.0, 22.0 -0.2
(B6.5XFAD x BXD75)F1-ADtg f 15.25 7.2744   4 3.6372 0.477 6.0, 22.0 -1.29
(B6.5XFAD x BXD75)F1-Ntg f 20.667 5.0067   6 2.044 0.2423 13.0, 26.0 -0.69
(B6.5XFAD x BXD81)F1-ADtg f 26.0 5.2154   6 2.1292 0.2006 18.0, 31.0 -0.11
(B6.5XFAD x BXD81)F1-Ntg f 29.8 4.2071   5 1.8815 0.1412 24.0, 34.0 0.31
(B6.5XFAD x BXD87)F1-ADtg f 20.0 5.244   5 2.3452 0.2622 12.0, 26.0 -0.76
(B6.5XFAD x BXD99)F1-ADtg f 35.0 0.0   1   0.0 0.0 35.0, 35.0 0.88
(B6.5XFAD x BXD99)F1-Ntg f 53.0 0.0   1   0.0 0.0 53.0, 53.0 2.86
(B6.5XFAD x D2)F1-ADtg f 24.0 3.6056   3 2.0817 0.1502 20.0, 27.0 -0.33
(B6.5XFAD x D2)F1-Ntg f 23.333 8.5479   6 3.4897 0.3663 15.0, 37.0 -0.4


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
(B6.5XFAD x BXD44)F1-ADtg f 16.0 3.0945 22.455 9.545
(B6.5XFAD x BXD44)F1-ADtg m 21.0 4.8928 31.2063 10.7937
(B6.5XFAD x BXD65)F1-ADtg f 36.5714 2.6153 42.0269 31.116
(B6.5XFAD x BXD65)F1-ADtg m 22.5 4.8928 32.7063 12.2937
(B6.5XFAD x BXD65)F1-Ntg f 28.875 2.4464 33.9781 23.7719
(B6.5XFAD x BXD65)F1-Ntg m 38.5 4.8928 48.7063 28.2937


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
(B6.5XFAD x BXD44)F1-ADtg both 18.5 2.8946 24.5381 12.4619
(B6.5XFAD x BXD65)F1-ADtg both 29.5357 2.774 35.3221 23.7493
(B6.5XFAD x BXD65)F1-Ntg both 33.6875 2.7352 39.393 27.982




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA