Phenotype measure:   Neuner1   Ymaze_ent_4mo


  STRAIN COMPARISON PLOT
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Neuner1 - number of arm entries in Y-maze 4 mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested52 strains31 strains
Mean of the strain means29.03   n 25.303   n
Median of the strain means28.194   n 26.0   n
SD of the strain means± 7.8641 ± 7.0981
Coefficient of variation (CV)0.2709 0.2805
Min–max range of strain means13.5   –   48.875   n 12.0   –   38.167   n
Mean sample size per strain6.3   mice 4.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 312.4086 312.4086 5.1435 0.0241
strain 28 13349.6995 476.775 7.8497 < 0.0001
sex:strain 28 2870.505 102.518 1.6879 0.0191
Residuals 272 16520.7838 60.7382


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x B6)F1-ADtg f 47.6 13.315   5 5.9548 0.2797 32.0, 65.0 2.36
(B6.5XFAD x B6)F1-ADtg m 27.0 13.663   7 5.164 0.506 13.0, 50.0 0.24
(B6.5XFAD x B6)F1-Ntg f 44.0 11.065   10 3.4992 0.2515 28.0, 61.0 1.9
(B6.5XFAD x B6)F1-Ntg m 38.167 12.416   6 5.069 0.3253 14.0, 49.0 1.81
(B6.5XFAD x BXD100)F1-ADtg f 20.5 7.3144   6 2.9861 0.3568 13.0, 34.0 -1.08
(B6.5XFAD x BXD100)F1-ADtg m 17.556 3.3953   9 1.1318 0.1934 14.0, 25.0 -1.09
(B6.5XFAD x BXD100)F1-Ntg f 18.833 7.7309   6 3.1561 0.4105 6.0, 28.0 -1.3
(B6.5XFAD x BXD100)F1-Ntg m 18.167 6.4317   6 2.6257 0.354 8.0, 25.0 -1.01
(B6.5XFAD x BXD14)F1-ADtg f 37.889 6.6792   9 2.2264 0.1763 27.0, 47.0 1.13
(B6.5XFAD x BXD14)F1-Ntg f 35.25 8.6168   4 4.3084 0.2444 29.0, 48.0 0.79
(B6.5XFAD x BXD16)F1-ADtg f 36.375 13.32   8 4.7092 0.3662 14.0, 54.0 0.93
(B6.5XFAD x BXD22)F1-ADtg f 29.5 0.70711   2   0.5 0.024 29.0, 30.0 0.06
(B6.5XFAD x BXD22)F1-Ntg f 35.25 4.3493   4 2.1747 0.1234 29.0, 39.0 0.79
(B6.5XFAD x BXD2)F1-ADtg f 22.625 7.6893   8 2.7186 0.3399 11.0, 35.0 -0.81
(B6.5XFAD x BXD2)F1-Ntg f 30.833 12.416   6 5.069 0.4027 13.0, 45.0 0.23
(B6.5XFAD x BXD32)F1-ADtg f 35.375 8.7495   8 3.0934 0.2473 25.0, 50.0 0.81
(B6.5XFAD x BXD32)F1-ADtg m 36.333 3.4448   6 1.4063 0.0948 31.0, 41.0 1.55
(B6.5XFAD x BXD32)F1-Ntg f 35.0 7.1181   4 3.559 0.2034 27.0, 41.0 0.76
(B6.5XFAD x BXD32)F1-Ntg m 32.75 5.5   4 2.75 0.1679 25.0, 38.0 1.05
(B6.5XFAD x BXD34)F1-ADtg f 17.7 5.6184   10 1.7767 0.3174 10.0, 28.0 -1.44
(B6.5XFAD x BXD34)F1-Ntg f 19.583 6.2006   12 1.7899 0.3166 10.0, 31.0 -1.2
(B6.5XFAD x BXD42)F1-ADtg f 31.0 10.351   8 3.6596 0.3339 9.0, 41.0 0.25
(B6.5XFAD x BXD42)F1-Ntg f 29.6 6.1074   5 2.7313 0.2063 23.0, 37.0 0.07
(B6.5XFAD x BXD44)F1-ADtg f 18.818 7.8971   11 2.3811 0.4197 8.0, 36.0 -1.3
(B6.5XFAD x BXD44)F1-ADtg m 23.5 6.2849   6 2.5658 0.2674 16.0, 32.0 -0.25
(B6.5XFAD x BXD44)F1-Ntg f 25.5 7.7782   2   5.5 0.305 20.0, 31.0 -0.45
(B6.5XFAD x BXD44)F1-Ntg m 34.0 2.8284   2   2.0 0.0832 32.0, 36.0 1.23
(B6.5XFAD x BXD51)F1-ADtg f 25.5 6.3019   8 2.2281 0.2471 18.0, 34.0 -0.45
(B6.5XFAD x BXD51)F1-Ntg f 30.571 7.4578   7 2.8188 0.2439 20.0, 39.0 0.2
(B6.5XFAD x BXD55)F1-ADtg f 43.0 14.228   10 4.4994 0.3309 23.0, 74.0 1.78
(B6.5XFAD x BXD55)F1-Ntg f 35.333 12.925   6 5.2768 0.3658 14.0, 46.0 0.8
(B6.5XFAD x BXD56)F1-ADtg f 27.5 4.9497   2   3.5 0.18 24.0, 31.0 -0.19
(B6.5XFAD x BXD56)F1-Ntg f 34.0 1.0   3 0.57735 0.0294 33.0, 35.0 0.63
(B6.5XFAD x BXD60)F1-ADtg f 34.2 3.2711   5 1.4629 0.0956 30.0, 39.0 0.66
(B6.5XFAD x BXD60)F1-ADtg m 24.286 8.4993   7 3.2124 0.35 11.0, 39.0 -0.14
(B6.5XFAD x BXD60)F1-Ntg f 35.6 6.9498   5 3.1081 0.1952 27.0, 44.0 0.84
(B6.5XFAD x BXD61)F1-ADtg f 24.333 4.3205   6 1.7638 0.1776 16.0, 28.0 -0.6
(B6.5XFAD x BXD61)F1-ADtg m 20.0 2.9439   4 1.472 0.1472 17.0, 24.0 -0.75
(B6.5XFAD x BXD61)F1-Ntg f 20.0 6.0828   3 3.5119 0.3041 13.0, 24.0 -1.15
(B6.5XFAD x BXD61)F1-Ntg m 27.75 11.871   4 5.9354 0.4278 10.0, 35.0 0.34
(B6.5XFAD x BXD62)F1-ADtg f 23.0 0.0   1   0.0 0.0 23.0, 23.0 -0.77
(B6.5XFAD x BXD62)F1-ADtg m 16.333 11.59   3 6.6916 0.7096 4.0, 27.0 -1.26
(B6.5XFAD x BXD62)F1-Ntg f 21.0 3.0   3 1.7321 0.1429 18.0, 24.0 -1.02
(B6.5XFAD x BXD62)F1-Ntg m 13.25 6.3966   4 3.1983 0.4828 6.0, 20.0 -1.7
(B6.5XFAD x BXD65)F1-ADtg f 29.7 8.0146   10 2.5344 0.2699 13.0, 42.0 0.09
(B6.5XFAD x BXD65)F1-ADtg m 28.0 9.4516   4 4.7258 0.3376 21.0, 41.0 0.38
(B6.5XFAD x BXD65)F1-Ntg f 28.889 9.8164   9 3.2721 0.3398 11.0, 40.0 -0.02
(B6.5XFAD x BXD65)F1-Ntg m 34.667 6.6533   6 2.7162 0.1919 26.0, 44.0 1.32
(B6.5XFAD x BXD66)F1-ADtg f 22.25 4.9244   4 2.4622 0.2213 16.0, 28.0 -0.86
(B6.5XFAD x BXD66)F1-ADtg m 18.444 3.9721   9 1.324 0.2154 14.0, 26.0 -0.97
(B6.5XFAD x BXD66)F1-Ntg f 27.0 14.142   2   10.0 0.5238 17.0, 37.0 -0.26
(B6.5XFAD x BXD66)F1-Ntg m 24.25 5.5   4 2.75 0.2268 19.0, 29.0 -0.15
(B6.5XFAD x BXD68)F1-ADtg f 26.0 4.0825   7 1.543 0.157 20.0, 31.0 -0.39
(B6.5XFAD x BXD68)F1-ADtg m 19.375 7.463   8 2.6386 0.3852 10.0, 30.0 -0.84
(B6.5XFAD x BXD68)F1-Ntg f 24.778 6.2737   18 1.4787 0.2532 15.0, 37.0 -0.54
(B6.5XFAD x BXD68)F1-Ntg m 26.0 9.2014   4 4.6007 0.3539 17.0, 38.0 0.1
(B6.5XFAD x BXD69)F1-ADtg f 26.0 5.5857   6 2.2804 0.2148 19.0, 34.0 -0.39
(B6.5XFAD x BXD69)F1-ADtg m 31.4 17.344   5 7.7563 0.5523 15.0, 59.0 0.86
(B6.5XFAD x BXD69)F1-Ntg f 26.333 5.5076   3 3.1798 0.2091 21.0, 32.0 -0.34
(B6.5XFAD x BXD69)F1-Ntg m 32.0 6.0828   3 3.5119 0.1901 28.0, 39.0 0.94
(B6.5XFAD x BXD75)F1-ADtg f 19.0 7.5166   5 3.3615 0.3956 8.0, 27.0 -1.28
(B6.5XFAD x BXD75)F1-ADtg m 21.5 3.5637   6 1.4549 0.1658 18.0, 28.0 -0.54
(B6.5XFAD x BXD75)F1-Ntg f 20.875 8.4589   8 2.9907 0.4052 11.0, 34.0 -1.04
(B6.5XFAD x BXD75)F1-Ntg m 29.0 4.2426   2   3.0 0.1463 26.0, 32.0 0.52
(B6.5XFAD x BXD77)F1-ADtg f 13.5 4.9497   2   3.5 0.3666 10.0, 17.0 -1.97
(B6.5XFAD x BXD77)F1-ADtg m 12.0 0.0   2   0.0 0.0 12.0, 12.0 -1.87
(B6.5XFAD x BXD77)F1-Ntg f 21.6 10.065   5 4.5011 0.466 9.0, 36.0 -0.94
(B6.5XFAD x BXD77)F1-Ntg m 15.5 4.3589   4 2.1794 0.2812 9.0, 18.0 -1.38
(B6.5XFAD x BXD81)F1-ADtg f 35.583 13.595   12 3.9244 0.382 8.0, 57.0 0.83
(B6.5XFAD x BXD81)F1-Ntg f 48.875 10.006   8 3.5377 0.2047 37.0, 66.0 2.52
(B6.5XFAD x BXD87)F1-ADtg f 24.846 8.4543   13 2.3448 0.3403 10.0, 41.0 -0.53
(B6.5XFAD x BXD87)F1-ADtg m 19.5 6.9522   4 3.4761 0.3565 13.0, 26.0 -0.82
(B6.5XFAD x BXD87)F1-Ntg f 26.833 8.5186   6 3.4777 0.3175 12.0, 35.0 -0.28
(B6.5XFAD x BXD87)F1-Ntg m 24.25 7.1822   4 3.5911 0.2962 20.0, 35.0 -0.15
(B6.5XFAD x BXD89)F1-ADtg m 27.0 0.0   1   0.0 0.0 27.0, 27.0 0.24
(B6.5XFAD x BXD89)F1-Ntg f 36.0 2.8284   2   2.0 0.0786 34.0, 38.0 0.89
(B6.5XFAD x BXD89)F1-Ntg m 34.0 8.4853   2   6.0 0.2496 28.0, 40.0 1.23
(B6.5XFAD x BXD99)F1-ADtg f 31.5 7.7244   4 3.8622 0.2452 21.0, 39.0 0.31
(B6.5XFAD x BXD99)F1-Ntg f 39.0 0.0   1   0.0 0.0 39.0, 39.0 1.27
(B6.5XFAD x D2)F1-ADtg f 30.6 4.9933   10 1.579 0.1632 23.0, 38.0 0.2
(B6.5XFAD x D2)F1-ADtg m 27.0 8.226   7 3.1091 0.3047 18.0, 39.0 0.24
(B6.5XFAD x D2)F1-Ntg f 25.143 5.5806   7 2.1093 0.222 19.0, 33.0 -0.49
(B6.5XFAD x D2)F1-Ntg m 31.4 3.3615   5 1.5033 0.1071 26.0, 35.0 0.86


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
(B6.5XFAD x B6)F1-ADtg f 47.6 3.4853 54.4617 40.7383
(B6.5XFAD x B6)F1-ADtg m 27.0 2.9457 32.7992 21.2008
(B6.5XFAD x B6)F1-Ntg f 44.0 2.4645 48.8519 39.1481
(B6.5XFAD x B6)F1-Ntg m 38.1667 3.1817 44.4305 31.9028
(B6.5XFAD x BXD100)F1-ADtg f 20.5 3.1817 26.7638 14.2362
(B6.5XFAD x BXD100)F1-ADtg m 17.5556 2.5978 22.67 12.4412
(B6.5XFAD x BXD100)F1-Ntg f 18.8333 3.1817 25.0972 12.5695
(B6.5XFAD x BXD100)F1-Ntg m 18.1667 3.1817 24.4305 11.9028
(B6.5XFAD x BXD32)F1-ADtg f 35.375 2.7554 40.7996 29.9504
(B6.5XFAD x BXD32)F1-ADtg m 36.3333 3.1817 42.5972 30.0695
(B6.5XFAD x BXD32)F1-Ntg f 35.0 3.8967 42.6716 27.3284
(B6.5XFAD x BXD32)F1-Ntg m 32.75 3.8967 40.4216 25.0784
(B6.5XFAD x BXD44)F1-ADtg f 18.8182 2.3498 23.4443 14.192
(B6.5XFAD x BXD44)F1-ADtg m 23.5 3.1817 29.7638 17.2362
(B6.5XFAD x BXD44)F1-Ntg f 25.5 5.5108 36.3493 14.6507
(B6.5XFAD x BXD44)F1-Ntg m 34.0 5.5108 44.8493 23.1507
(B6.5XFAD x BXD60)F1-ADtg f 34.2 3.4853 41.0617 27.3383
(B6.5XFAD x BXD60)F1-ADtg m 24.2857 2.9457 30.0849 18.4865
(B6.5XFAD x BXD61)F1-ADtg f 24.3333 3.1817 30.5972 18.0695
(B6.5XFAD x BXD61)F1-ADtg m 20.0 3.8967 27.6716 12.3284
(B6.5XFAD x BXD61)F1-Ntg f 20.0 4.4996 28.8584 11.1416
(B6.5XFAD x BXD61)F1-Ntg m 27.75 3.8967 35.4216 20.0784
(B6.5XFAD x BXD62)F1-Ntg f 21.0 4.4996 29.8584 12.1416
(B6.5XFAD x BXD62)F1-Ntg m 13.25 3.8967 20.9216 5.5784
(B6.5XFAD x BXD65)F1-ADtg f 29.7 2.4645 34.5519 24.8481
(B6.5XFAD x BXD65)F1-ADtg m 28.0 3.8967 35.6716 20.3284
(B6.5XFAD x BXD65)F1-Ntg f 28.8889 2.5978 34.0033 23.7745
(B6.5XFAD x BXD65)F1-Ntg m 34.6667 3.1817 40.9305 28.4028
(B6.5XFAD x BXD66)F1-ADtg f 22.25 3.8967 29.9216 14.5784
(B6.5XFAD x BXD66)F1-ADtg m 18.4444 2.5978 23.5588 13.33
(B6.5XFAD x BXD66)F1-Ntg f 27.0 5.5108 37.8493 16.1507
(B6.5XFAD x BXD66)F1-Ntg m 24.25 3.8967 31.9216 16.5784
(B6.5XFAD x BXD68)F1-ADtg f 26.0 2.9457 31.7992 20.2008
(B6.5XFAD x BXD68)F1-ADtg m 19.375 2.7554 24.7996 13.9504
(B6.5XFAD x BXD68)F1-Ntg f 24.7778 1.8369 28.3942 21.1614
(B6.5XFAD x BXD68)F1-Ntg m 26.0 3.8967 33.6716 18.3284
(B6.5XFAD x BXD69)F1-ADtg f 26.0 3.1817 32.2638 19.7362
(B6.5XFAD x BXD69)F1-ADtg m 31.4 3.4853 38.2617 24.5383
(B6.5XFAD x BXD69)F1-Ntg f 26.3333 4.4996 35.1917 17.4749
(B6.5XFAD x BXD69)F1-Ntg m 32.0 4.4996 40.8584 23.1416
(B6.5XFAD x BXD75)F1-ADtg f 19.0 3.4853 25.8617 12.1383
(B6.5XFAD x BXD75)F1-ADtg m 21.5 3.1817 27.7638 15.2362
(B6.5XFAD x BXD75)F1-Ntg f 20.875 2.7554 26.2996 15.4504
(B6.5XFAD x BXD75)F1-Ntg m 29.0 5.5108 39.8493 18.1507
(B6.5XFAD x BXD77)F1-ADtg f 13.5 5.5108 24.3493 2.6507
(B6.5XFAD x BXD77)F1-ADtg m 12.0 5.5108 22.8493 1.1507
(B6.5XFAD x BXD77)F1-Ntg f 21.6 3.4853 28.4617 14.7383
(B6.5XFAD x BXD77)F1-Ntg m 15.5 3.8967 23.1716 7.8284
(B6.5XFAD x BXD87)F1-ADtg f 24.8462 2.1615 29.1016 20.5907
(B6.5XFAD x BXD87)F1-ADtg m 19.5 3.8967 27.1716 11.8284
(B6.5XFAD x BXD87)F1-Ntg f 26.8333 3.1817 33.0972 20.5695
(B6.5XFAD x BXD87)F1-Ntg m 24.25 3.8967 31.9216 16.5784
(B6.5XFAD x BXD89)F1-Ntg f 36.0 5.5108 46.8493 25.1507
(B6.5XFAD x BXD89)F1-Ntg m 34.0 5.5108 44.8493 23.1507
(B6.5XFAD x D2)F1-ADtg f 30.6 2.4645 35.4519 25.7481
(B6.5XFAD x D2)F1-ADtg m 27.0 2.9457 32.7992 21.2008
(B6.5XFAD x D2)F1-Ntg f 25.1429 2.9457 30.942 19.3437
(B6.5XFAD x D2)F1-Ntg m 31.4 3.4853 38.2617 24.5383


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
(B6.5XFAD x B6)F1-ADtg both 37.3 2.2817 41.792 32.808
(B6.5XFAD x B6)F1-Ntg both 41.0833 2.0123 45.0449 37.1217
(B6.5XFAD x BXD100)F1-ADtg both 19.0278 2.0538 23.0711 14.9845
(B6.5XFAD x BXD100)F1-Ntg both 18.5 2.2498 22.9292 14.0708
(B6.5XFAD x BXD32)F1-ADtg both 35.8542 2.1045 39.9973 31.711
(B6.5XFAD x BXD32)F1-Ntg both 33.875 2.7554 39.2996 28.4504
(B6.5XFAD x BXD44)F1-ADtg both 21.1591 1.9777 25.0526 17.2656
(B6.5XFAD x BXD44)F1-Ntg both 29.75 3.8967 37.4216 22.0784
(B6.5XFAD x BXD60)F1-ADtg both 29.2429 2.2817 33.7349 24.7508
(B6.5XFAD x BXD61)F1-ADtg both 22.1667 2.5153 27.1187 17.2147
(B6.5XFAD x BXD61)F1-Ntg both 23.875 2.9762 29.7343 18.0157
(B6.5XFAD x BXD62)F1-Ntg both 17.125 2.9762 22.9843 11.2657
(B6.5XFAD x BXD65)F1-ADtg both 28.85 2.3053 33.3886 24.3114
(B6.5XFAD x BXD65)F1-Ntg both 31.7778 2.0538 35.8211 27.7345
(B6.5XFAD x BXD66)F1-ADtg both 20.3472 2.3416 24.9573 15.7372
(B6.5XFAD x BXD66)F1-Ntg both 25.625 3.3747 32.2688 18.9812
(B6.5XFAD x BXD68)F1-ADtg both 22.6875 2.0168 26.6579 18.7171
(B6.5XFAD x BXD68)F1-Ntg both 25.3889 2.154 29.6295 21.1483
(B6.5XFAD x BXD69)F1-ADtg both 28.7 2.3596 33.3454 24.0546
(B6.5XFAD x BXD69)F1-Ntg both 29.1667 3.1817 35.4305 22.9028
(B6.5XFAD x BXD75)F1-ADtg both 20.25 2.3596 24.8954 15.6046
(B6.5XFAD x BXD75)F1-Ntg both 24.9375 3.0806 31.0024 18.8726
(B6.5XFAD x BXD77)F1-ADtg both 12.75 3.8967 20.4216 5.0784
(B6.5XFAD x BXD77)F1-Ntg both 18.55 2.614 23.6963 13.4037
(B6.5XFAD x BXD87)F1-ADtg both 22.1731 2.228 26.5595 17.7867
(B6.5XFAD x BXD87)F1-Ntg both 25.5417 2.5153 30.4937 20.5897
(B6.5XFAD x BXD89)F1-Ntg both 35.0 3.8967 42.6716 27.3284
(B6.5XFAD x D2)F1-ADtg both 28.8 1.9203 32.5806 25.0194
(B6.5XFAD x D2)F1-Ntg both 28.2714 2.2817 32.7635 23.7794




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA