Phenotype measure:   Neuner1   Ymaze_spon_alt_10mo

ID, description, units MPD:65917   Ymaze_spon_alt_10mo   percentage spontaneous alternation in Y-maze   [%]  10 mo
Data set, strains Neuner1   F1 AD-BXD   32 strains     sex: both     age: 7-65wks
Procedure Y-maze
Ontology mappings

  STRAIN COMPARISON PLOT
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Neuner1 - percentage spontaneous alternation in Y-maze 10 mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested29 strains8 strains
Mean of the strain means53.67   % 59.8   %
Median of the strain means52.0   % 59.12   %
SD of the strain means± 8.0432 ± 13.263
Coefficient of variation (CV)0.1499 0.2218
Min–max range of strain means39.0   –   73.0   % 39.5   –   85.0   %
Mean sample size per strain3.5   mice 2.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 122.4115 122.4115 0.9751 0.3352
strain 2 706.6747 353.3373 2.8145 0.0837
sex:strain 2 488.5753 244.2877 1.9459 0.169
Residuals 20 2510.8 125.54


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x B6)F1-ADtg m 56.67 16.773   3 9.6839 0.296 46.0, 76.0 -0.24
(B6.5XFAD x B6)F1-Ntg f 54.0 0.0   1   0.0 0.0 54.0, 54.0 0.04
(B6.5XFAD x B6)F1-Ntg m 49.0 5.6569   2   4.0 0.1154 45.0, 53.0 -0.81
(B6.5XFAD x BXD100)F1-ADtg m 58.5 12.021   2   8.5 0.2055 50.0, 67.0 -0.1
(B6.5XFAD x BXD14)F1-ADtg f 52.0 0.0   1   0.0 0.0 52.0, 52.0 -0.21
(B6.5XFAD x BXD14)F1-Ntg f 48.0 2.8284   2   2.0 0.0589 46.0, 50.0 -0.71
(B6.5XFAD x BXD16)F1-ADtg f 47.0 19.933   4 9.9666 0.4241 27.0, 67.0 -0.83
(B6.5XFAD x BXD22)F1-ADtg f 53.0 0.0   2   0.0 0.0 53.0, 53.0 -0.08
(B6.5XFAD x BXD22)F1-Ntg f 53.33 20.207   3 11.667 0.3789 35.0, 75.0 -0.04
(B6.5XFAD x BXD2)F1-ADtg f 44.0 11.225   4 5.6125 0.2551 29.0, 56.0 -1.2
(B6.5XFAD x BXD2)F1-Ntg f 57.0 0.0   1   0.0 0.0 57.0, 57.0 0.41
(B6.5XFAD x BXD34)F1-ADtg f 68.0 25.456   2   18.0 0.3744 50.0, 86.0 1.78
(B6.5XFAD x BXD34)F1-Ntg f 70.0 0.0   1   0.0 0.0 70.0, 70.0 2.03
(B6.5XFAD x BXD42)F1-ADtg f 52.0 9.0   3 5.1962 0.1731 43.0, 61.0 -0.21
(B6.5XFAD x BXD42)F1-Ntg f 73.0 0.0   1   0.0 0.0 73.0, 73.0 2.4
(B6.5XFAD x BXD44)F1-ADtg f 58.2 18.431   5 8.2426 0.3167 39.0, 83.0 0.56
(B6.5XFAD x BXD44)F1-ADtg m 64.0 16.971   2   12.0 0.2652 52.0, 76.0 0.32
(B6.5XFAD x BXD51)F1-ADtg f 63.0 18.074   4 9.037 0.2869 46.0, 84.0 1.16
(B6.5XFAD x BXD51)F1-Ntg f 50.25 3.6856   4 1.8428 0.0733 46.0, 55.0 -0.43
(B6.5XFAD x BXD55)F1-ADtg f 51.75 19.805   4 9.9027 0.3827 28.0, 76.0 -0.24
(B6.5XFAD x BXD55)F1-Ntg f 48.5 14.849   2   10.5 0.3062 38.0, 59.0 -0.64
(B6.5XFAD x BXD65)F1-ADtg f 50.0 9.5219   7 3.5989 0.1904 31.0, 58.0 -0.46
(B6.5XFAD x BXD65)F1-ADtg m 66.0 1.4142   2   1.0 0.0214 65.0, 67.0 0.47
(B6.5XFAD x BXD65)F1-Ntg f 48.25 6.4752   8 2.2893 0.1342 39.0, 57.0 -0.67
(B6.5XFAD x BXD65)F1-Ntg m 39.5 4.9497   2   3.5 0.1253 36.0, 43.0 -1.53
(B6.5XFAD x BXD68)F1-ADtg m 59.75 4.7871   4 2.3936 0.0801 53.0, 64.0 0.0
(B6.5XFAD x BXD68)F1-Ntg f 52.17 17.781   6 7.2591 0.3409 38.0, 86.0 -0.19
(B6.5XFAD x BXD68)F1-Ntg m 85.0 0.0   1   0.0 0.0 85.0, 85.0 1.9
(B6.5XFAD x BXD75)F1-ADtg f 55.5 18.285   4 9.1424 0.3295 40.0, 82.0 0.23
(B6.5XFAD x BXD75)F1-Ntg f 54.83 12.287   6 5.0161 0.2241 36.0, 71.0 0.14
(B6.5XFAD x BXD81)F1-ADtg f 49.0 6.8702   6 2.8048 0.1402 41.0, 56.0 -0.58
(B6.5XFAD x BXD81)F1-Ntg f 45.2 12.133   5 5.4259 0.2684 32.0, 62.0 -1.05
(B6.5XFAD x BXD87)F1-ADtg f 52.4 12.502   5 5.5911 0.2386 40.0, 71.0 -0.16
(B6.5XFAD x BXD99)F1-ADtg f 39.0 0.0   1   0.0 0.0 39.0, 39.0 -1.82
(B6.5XFAD x BXD99)F1-Ntg f 47.0 0.0   1   0.0 0.0 47.0, 47.0 -0.83
(B6.5XFAD x D2)F1-ADtg f 51.67 11.15   3 6.4377 0.2158 39.0, 60.0 -0.25
(B6.5XFAD x D2)F1-Ntg f 68.5 10.252   6 4.1853 0.1497 53.0, 79.0 1.84


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
(B6.5XFAD x BXD44)F1-ADtg f 58.2 5.0108 68.6523 47.7477
(B6.5XFAD x BXD44)F1-ADtg m 64.0 7.9228 80.5266 47.4734
(B6.5XFAD x BXD65)F1-ADtg f 50.0 4.2349 58.8338 41.1662
(B6.5XFAD x BXD65)F1-ADtg m 66.0 7.9228 82.5266 49.4734
(B6.5XFAD x BXD65)F1-Ntg f 48.25 3.9614 56.5133 39.9867
(B6.5XFAD x BXD65)F1-Ntg m 39.5 7.9228 56.0266 22.9734


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
(B6.5XFAD x BXD44)F1-ADtg both 61.1 4.6872 70.8773 51.3227
(B6.5XFAD x BXD65)F1-ADtg both 58.0 4.4918 67.3697 48.6303
(B6.5XFAD x BXD65)F1-Ntg both 43.875 4.429 53.1136 34.6364




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA