Phenotype measure:   Neuner1   Ymaze_spon_alt_4mo

ID, description, units MPD:65914   Ymaze_spon_alt_4mo   percentage spontaneous alternation in Y-maze   [%]  4 mo
Data set, strains Neuner1   F1 AD-BXD   53 strains     sex: both     age: 7-65wks
Procedure Y-maze
Ontology mappings

  STRAIN COMPARISON PLOT
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Neuner1 - percentage spontaneous alternation in Y-maze 4 mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested52 strains31 strains
Mean of the strain means60.13   % 63.47   %
Median of the strain means59.95   % 64.0   %
SD of the strain means± 6.7498 ± 6.3592
Coefficient of variation (CV)0.1122 0.1002
Min–max range of strain means43.0   –   74.0   % 51.0   –   75.0   %
Mean sample size per strain6.3   mice 4.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 92.5558 92.5558 0.831 0.3628
strain 28 7156.5841 255.5923 2.2947 0.0004
sex:strain 28 2660.7023 95.0251 0.8531 0.683
Residuals 272 30296.8124 111.3853


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x B6)F1-ADtg f 52.0 3.6056   5 1.6125 0.0693 47.0, 57.0 -1.21
(B6.5XFAD x B6)F1-ADtg m 66.43 9.5019   7 3.5914 0.143 50.0, 79.0 0.46
(B6.5XFAD x B6)F1-Ntg f 58.8 8.7914   10 2.7801 0.1495 47.0, 69.0 -0.2
(B6.5XFAD x B6)F1-Ntg m 57.83 7.0261   6 2.8684 0.1215 47.0, 67.0 -0.89
(B6.5XFAD x BXD100)F1-ADtg f 68.17 9.4745   6 3.868 0.139 57.0, 82.0 1.19
(B6.5XFAD x BXD100)F1-ADtg m 61.78 13.782   9 4.594 0.2231 43.0, 85.0 -0.27
(B6.5XFAD x BXD100)F1-Ntg f 68.83 11.179   6 4.5637 0.1624 56.0, 85.0 1.29
(B6.5XFAD x BXD100)F1-Ntg m 68.83 11.974   6 4.8882 0.174 53.0, 85.0 0.84
(B6.5XFAD x BXD14)F1-ADtg f 54.33 11.358   9 3.7859 0.209 39.0, 71.0 -0.86
(B6.5XFAD x BXD14)F1-Ntg f 56.25 12.58   4 6.2899 0.2236 43.0, 67.0 -0.58
(B6.5XFAD x BXD16)F1-ADtg f 60.0 13.846   8 4.8953 0.2308 48.0, 92.0 -0.02
(B6.5XFAD x BXD22)F1-ADtg f 65.5 6.364   2   4.5 0.0972 61.0, 70.0 0.79
(B6.5XFAD x BXD22)F1-Ntg f 63.5 6.6081   4 3.304 0.1041 56.0, 70.0 0.5
(B6.5XFAD x BXD2)F1-ADtg f 68.38 16.518   8 5.8399 0.2416 47.0, 100.0 1.22
(B6.5XFAD x BXD2)F1-Ntg f 65.5 13.722   6 5.6021 0.2095 50.0, 91.0 0.79
(B6.5XFAD x BXD32)F1-ADtg f 54.62 8.2797   8 2.9273 0.1516 48.0, 71.0 -0.82
(B6.5XFAD x BXD32)F1-ADtg m 66.17 5.8452   6 2.3863 0.0883 59.0, 76.0 0.42
(B6.5XFAD x BXD32)F1-Ntg f 59.25 6.1847   4 3.0923 0.1044 54.0, 68.0 -0.13
(B6.5XFAD x BXD32)F1-Ntg m 55.25 5.909   4 2.9545 0.107 48.0, 61.0 -1.29
(B6.5XFAD x BXD34)F1-ADtg f 57.5 13.36   10 4.2249 0.2324 29.0, 76.0 -0.39
(B6.5XFAD x BXD34)F1-Ntg f 54.75 13.565   12 3.916 0.2478 31.0, 73.0 -0.8
(B6.5XFAD x BXD42)F1-ADtg f 59.5 10.014   8 3.5406 0.1683 43.0, 72.0 -0.09
(B6.5XFAD x BXD42)F1-Ntg f 51.8 13.405   5 5.995 0.2588 32.0, 66.0 -1.23
(B6.5XFAD x BXD44)F1-ADtg f 64.45 12.723   11 3.8361 0.1974 44.0, 83.0 0.64
(B6.5XFAD x BXD44)F1-ADtg m 64.0 10.139   6 4.1392 0.1584 50.0, 76.0 0.08
(B6.5XFAD x BXD44)F1-Ntg f 65.0 5.6569   2   4.0 0.087 61.0, 69.0 0.72
(B6.5XFAD x BXD44)F1-Ntg m 69.0 1.4142   2   1.0 0.0205 68.0, 70.0 0.87
(B6.5XFAD x BXD51)F1-ADtg f 72.75 12.859   8 4.5464 0.1768 54.0, 90.0 1.87
(B6.5XFAD x BXD51)F1-Ntg f 62.0 7.2342   7 2.7343 0.1167 55.0, 76.0 0.28
(B6.5XFAD x BXD55)F1-ADtg f 59.9 13.354   10 4.2228 0.2229 36.0, 86.0 -0.03
(B6.5XFAD x BXD55)F1-Ntg f 62.83 8.612   6 3.5158 0.1371 50.0, 75.0 0.4
(B6.5XFAD x BXD56)F1-ADtg f 59.0 0.0   2   0.0 0.0 59.0, 59.0 -0.17
(B6.5XFAD x BXD56)F1-Ntg f 60.67 3.7859   3 2.1858 0.0624 58.0, 65.0 0.08
(B6.5XFAD x BXD60)F1-ADtg f 52.8 7.791   5 3.4843 0.1476 41.0, 61.0 -1.09
(B6.5XFAD x BXD60)F1-ADtg m 58.43 8.6189   7 3.2576 0.1475 46.0, 68.0 -0.79
(B6.5XFAD x BXD60)F1-Ntg f 59.4 8.0498   5 3.6 0.1355 48.0, 67.0 -0.11
(B6.5XFAD x BXD61)F1-ADtg f 56.17 5.5287   6 2.2571 0.0984 48.0, 64.0 -0.59
(B6.5XFAD x BXD61)F1-ADtg m 66.0 5.0332   4 2.5166 0.0763 59.0, 71.0 0.4
(B6.5XFAD x BXD61)F1-Ntg f 60.0 15.395   3 8.8882 0.2566 43.0, 73.0 -0.02
(B6.5XFAD x BXD61)F1-Ntg m 53.5 7.1414   4 3.5707 0.1335 48.0, 63.0 -1.57
(B6.5XFAD x BXD62)F1-ADtg f 43.0 0.0   1   0.0 0.0 43.0, 43.0 -2.54
(B6.5XFAD x BXD62)F1-ADtg m 73.67 24.338   3 14.051 0.3304 52.0, 100.0 1.6
(B6.5XFAD x BXD62)F1-Ntg f 56.33 1.5275   3 0.88192 0.0271 55.0, 58.0 -0.56
(B6.5XFAD x BXD62)F1-Ntg m 51.0 21.463   4 10.732 0.4208 25.0, 75.0 -1.96
(B6.5XFAD x BXD65)F1-ADtg f 60.0 10.822   10 3.4222 0.1804 44.0, 74.0 -0.02
(B6.5XFAD x BXD65)F1-ADtg m 63.0 17.944   4 8.9722 0.2848 42.0, 85.0 -0.07
(B6.5XFAD x BXD65)F1-Ntg f 57.44 7.6176   9 2.5392 0.1326 42.0, 71.0 -0.4
(B6.5XFAD x BXD65)F1-Ntg m 56.5 2.8107   6 1.1475 0.0497 54.0, 60.0 -1.1
(B6.5XFAD x BXD66)F1-ADtg f 53.25 12.945   4 6.4727 0.2431 40.0, 71.0 -1.02
(B6.5XFAD x BXD66)F1-ADtg m 58.56 9.0982   9 3.0327 0.1554 46.0, 75.0 -0.77
(B6.5XFAD x BXD66)F1-Ntg f 48.0 7.0711   2   5.0 0.1473 43.0, 53.0 -1.8
(B6.5XFAD x BXD66)F1-Ntg m 63.75 12.842   4 6.421 0.2014 47.0, 78.0 0.04
(B6.5XFAD x BXD68)F1-ADtg f 66.43 8.1006   7 3.0617 0.1219 56.0, 76.0 0.93
(B6.5XFAD x BXD68)F1-ADtg m 69.5 15.584   8 5.5097 0.2242 45.0, 92.0 0.95
(B6.5XFAD x BXD68)F1-Ntg f 64.39 11.428   18 2.6937 0.1775 43.0, 80.0 0.63
(B6.5XFAD x BXD68)F1-Ntg m 70.75 9.5699   4 4.785 0.1353 62.0, 80.0 1.14
(B6.5XFAD x BXD69)F1-ADtg f 60.67 11.673   6 4.7656 0.1924 43.0, 78.0 0.08
(B6.5XFAD x BXD69)F1-ADtg m 53.0 19.248   5 8.6081 0.3632 28.0, 71.0 -1.65
(B6.5XFAD x BXD69)F1-Ntg f 60.33 12.22   3 7.0553 0.2025 47.0, 71.0 0.03
(B6.5XFAD x BXD69)F1-Ntg m 67.67 11.719   3 6.7659 0.1732 59.0, 81.0 0.66
(B6.5XFAD x BXD75)F1-ADtg f 56.6 5.4129   5 2.4207 0.0956 50.0, 63.0 -0.52
(B6.5XFAD x BXD75)F1-ADtg m 65.17 9.411   6 3.842 0.1444 56.0, 83.0 0.27
(B6.5XFAD x BXD75)F1-Ntg f 70.62 9.7532   8 3.4483 0.1381 60.0, 85.0 1.55
(B6.5XFAD x BXD75)F1-Ntg m 71.0 5.6569   2   4.0 0.0797 67.0, 75.0 1.18
(B6.5XFAD x BXD77)F1-ADtg f 74.0 19.799   2   14.0 0.2676 60.0, 88.0 2.05
(B6.5XFAD x BXD77)F1-ADtg m 75.0 21.213   2   15.0 0.2828 60.0, 90.0 1.81
(B6.5XFAD x BXD77)F1-Ntg f 65.0 8.4558   5 3.7815 0.1301 56.0, 76.0 0.72
(B6.5XFAD x BXD77)F1-Ntg m 70.5 7.7244   4 3.8622 0.1096 63.0, 81.0 1.1
(B6.5XFAD x BXD81)F1-ADtg f 58.58 8.9082   12 2.5716 0.1521 48.0, 83.0 -0.23
(B6.5XFAD x BXD81)F1-Ntg f 46.875 6.4462   8 2.2791 0.1375 33.0, 53.0 -1.96
(B6.5XFAD x BXD87)F1-ADtg f 66.31 11.564   13 3.2073 0.1744 45.0, 84.0 0.91
(B6.5XFAD x BXD87)F1-ADtg m 65.0 11.165   4 5.5827 0.1718 50.0, 74.0 0.24
(B6.5XFAD x BXD87)F1-Ntg f 56.5 11.005   6 4.4926 0.1948 42.0, 75.0 -0.54
(B6.5XFAD x BXD87)F1-Ntg m 57.5 7.0475   4 3.5237 0.1226 50.0, 64.0 -0.94
(B6.5XFAD x BXD89)F1-ADtg m 60.0 0.0   1   0.0 0.0 60.0, 60.0 -0.55
(B6.5XFAD x BXD89)F1-Ntg f 59.5 4.9497   2   3.5 0.0832 56.0, 63.0 -0.09
(B6.5XFAD x BXD89)F1-Ntg m 59.5 13.435   2   9.5 0.2258 50.0, 69.0 -0.62
(B6.5XFAD x BXD99)F1-ADtg f 47.25 18.081   4 9.0404 0.3827 21.0, 62.0 -1.91
(B6.5XFAD x BXD99)F1-Ntg f 73.0 0.0   1   0.0 0.0 73.0, 73.0 1.91
(B6.5XFAD x D2)F1-ADtg f 65.0 11.45   10 3.6209 0.1762 43.0, 80.0 0.72
(B6.5XFAD x D2)F1-ADtg m 60.0 11.372   7 4.2984 0.1895 40.0, 73.0 -0.55
(B6.5XFAD x D2)F1-Ntg f 64.29 7.9313   7 2.9977 0.1234 52.0, 73.0 0.62
(B6.5XFAD x D2)F1-Ntg m 69.4 4.669   5 2.0881 0.0673 63.0, 76.0 0.93


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
(B6.5XFAD x B6)F1-ADtg f 52.0 4.7199 61.2921 42.7079
(B6.5XFAD x B6)F1-ADtg m 66.4286 3.989 74.2818 58.5753
(B6.5XFAD x B6)F1-Ntg f 58.8 3.3374 65.3705 52.2295
(B6.5XFAD x B6)F1-Ntg m 57.8333 4.3086 66.3158 49.3508
(B6.5XFAD x BXD100)F1-ADtg f 68.1667 4.3086 76.6492 59.6842
(B6.5XFAD x BXD100)F1-ADtg m 61.7778 3.518 68.7037 54.8519
(B6.5XFAD x BXD100)F1-Ntg f 68.8333 4.3086 77.3158 60.3508
(B6.5XFAD x BXD100)F1-Ntg m 68.8333 4.3086 77.3158 60.3508
(B6.5XFAD x BXD32)F1-ADtg f 54.625 3.7314 61.971 47.279
(B6.5XFAD x BXD32)F1-ADtg m 66.1667 4.3086 74.6492 57.6842
(B6.5XFAD x BXD32)F1-Ntg f 59.25 5.277 69.6389 48.8611
(B6.5XFAD x BXD32)F1-Ntg m 55.25 5.277 65.6389 44.8611
(B6.5XFAD x BXD44)F1-ADtg f 64.4545 3.1821 70.7193 58.1898
(B6.5XFAD x BXD44)F1-ADtg m 64.0 4.3086 72.4825 55.5175
(B6.5XFAD x BXD44)F1-Ntg f 65.0 7.4628 79.6921 50.3079
(B6.5XFAD x BXD44)F1-Ntg m 69.0 7.4628 83.6921 54.3079
(B6.5XFAD x BXD60)F1-ADtg f 52.8 4.7199 62.0921 43.5079
(B6.5XFAD x BXD60)F1-ADtg m 58.4286 3.989 66.2818 50.5753
(B6.5XFAD x BXD61)F1-ADtg f 56.1667 4.3086 64.6492 47.6842
(B6.5XFAD x BXD61)F1-ADtg m 66.0 5.277 76.3889 55.6111
(B6.5XFAD x BXD61)F1-Ntg f 60.0 6.0933 71.996 48.004
(B6.5XFAD x BXD61)F1-Ntg m 53.5 5.277 63.8889 43.1111
(B6.5XFAD x BXD62)F1-Ntg f 56.3333 6.0933 68.3294 44.3373
(B6.5XFAD x BXD62)F1-Ntg m 51.0 5.277 61.3889 40.6111
(B6.5XFAD x BXD65)F1-ADtg f 60.0 3.3374 66.5705 53.4295
(B6.5XFAD x BXD65)F1-ADtg m 63.0 5.277 73.3889 52.6111
(B6.5XFAD x BXD65)F1-Ntg f 57.4444 3.518 64.3704 50.5185
(B6.5XFAD x BXD65)F1-Ntg m 56.5 4.3086 64.9825 48.0175
(B6.5XFAD x BXD66)F1-ADtg f 53.25 5.277 63.6389 42.8611
(B6.5XFAD x BXD66)F1-ADtg m 58.5556 3.518 65.4815 51.6296
(B6.5XFAD x BXD66)F1-Ntg f 48.0 7.4628 62.6921 33.3079
(B6.5XFAD x BXD66)F1-Ntg m 63.75 5.277 74.1389 53.3611
(B6.5XFAD x BXD68)F1-ADtg f 66.4286 3.989 74.2818 58.5753
(B6.5XFAD x BXD68)F1-ADtg m 69.5 3.7314 76.846 62.154
(B6.5XFAD x BXD68)F1-Ntg f 64.3889 2.4876 69.2863 59.4915
(B6.5XFAD x BXD68)F1-Ntg m 70.75 5.277 81.1389 60.3611
(B6.5XFAD x BXD69)F1-ADtg f 60.6667 4.3086 69.1492 52.1842
(B6.5XFAD x BXD69)F1-ADtg m 53.0 4.7199 62.2921 43.7079
(B6.5XFAD x BXD69)F1-Ntg f 60.3333 6.0933 72.3294 48.3373
(B6.5XFAD x BXD69)F1-Ntg m 67.6667 6.0933 79.6627 55.6706
(B6.5XFAD x BXD75)F1-ADtg f 56.6 4.7199 65.8921 47.3079
(B6.5XFAD x BXD75)F1-ADtg m 65.1667 4.3086 73.6492 56.6842
(B6.5XFAD x BXD75)F1-Ntg f 70.625 3.7314 77.971 63.279
(B6.5XFAD x BXD75)F1-Ntg m 71.0 7.4628 85.6921 56.3079
(B6.5XFAD x BXD77)F1-ADtg f 74.0 7.4628 88.6921 59.3079
(B6.5XFAD x BXD77)F1-ADtg m 75.0 7.4628 89.6921 60.3079
(B6.5XFAD x BXD77)F1-Ntg f 65.0 4.7199 74.2921 55.7079
(B6.5XFAD x BXD77)F1-Ntg m 70.5 5.277 80.8889 60.1111
(B6.5XFAD x BXD87)F1-ADtg f 66.3077 2.9271 72.0704 60.545
(B6.5XFAD x BXD87)F1-ADtg m 65.0 5.277 75.3889 54.6111
(B6.5XFAD x BXD87)F1-Ntg f 56.5 4.3086 64.9825 48.0175
(B6.5XFAD x BXD87)F1-Ntg m 57.5 5.277 67.8889 47.1111
(B6.5XFAD x BXD89)F1-Ntg f 59.5 7.4628 74.1921 44.8079
(B6.5XFAD x BXD89)F1-Ntg m 59.5 7.4628 74.1921 44.8079
(B6.5XFAD x D2)F1-ADtg f 65.0 3.3374 71.5705 58.4295
(B6.5XFAD x D2)F1-ADtg m 60.0 3.989 67.8533 52.1467
(B6.5XFAD x D2)F1-Ntg f 64.2857 3.989 72.139 56.4325
(B6.5XFAD x D2)F1-Ntg m 69.4 4.7199 78.6921 60.1079


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
(B6.5XFAD x B6)F1-ADtg both 59.2143 3.0899 65.2974 53.1312
(B6.5XFAD x B6)F1-Ntg both 58.3167 2.725 63.6815 52.9519
(B6.5XFAD x BXD100)F1-ADtg both 64.9722 2.7812 70.4476 59.4968
(B6.5XFAD x BXD100)F1-Ntg both 68.8333 3.0467 74.8314 62.8353
(B6.5XFAD x BXD32)F1-ADtg both 60.3958 2.8499 66.0065 54.7852
(B6.5XFAD x BXD32)F1-Ntg both 57.25 3.7314 64.596 49.904
(B6.5XFAD x BXD44)F1-ADtg both 64.2273 2.6782 69.4998 58.9547
(B6.5XFAD x BXD44)F1-Ntg both 67.0 5.277 77.3889 56.6111
(B6.5XFAD x BXD60)F1-ADtg both 55.6143 3.0899 61.6974 49.5312
(B6.5XFAD x BXD61)F1-ADtg both 61.0833 3.4063 67.7893 54.3773
(B6.5XFAD x BXD61)F1-Ntg both 56.75 4.0303 64.6846 48.8154
(B6.5XFAD x BXD62)F1-Ntg both 53.6667 4.0303 61.6013 45.732
(B6.5XFAD x BXD65)F1-ADtg both 61.5 3.1219 67.6461 55.3539
(B6.5XFAD x BXD65)F1-Ntg both 56.9722 2.7812 62.4476 51.4968
(B6.5XFAD x BXD66)F1-ADtg both 55.9028 3.1711 62.1457 49.6598
(B6.5XFAD x BXD66)F1-Ntg both 55.875 4.57 64.872 46.878
(B6.5XFAD x BXD68)F1-ADtg both 67.9643 2.7311 73.341 62.5875
(B6.5XFAD x BXD68)F1-Ntg both 67.5694 2.917 73.3121 61.8268
(B6.5XFAD x BXD69)F1-ADtg both 56.8333 3.1954 63.1241 50.5426
(B6.5XFAD x BXD69)F1-Ntg both 64.0 4.3086 72.4825 55.5175
(B6.5XFAD x BXD75)F1-ADtg both 60.8833 3.1954 67.1741 54.5926
(B6.5XFAD x BXD75)F1-Ntg both 70.8125 4.1718 79.0256 62.5994
(B6.5XFAD x BXD77)F1-ADtg both 74.5 5.277 84.8889 64.1111
(B6.5XFAD x BXD77)F1-Ntg both 67.75 3.5399 74.7191 60.7809
(B6.5XFAD x BXD87)F1-ADtg both 65.6538 3.0172 71.5939 59.7138
(B6.5XFAD x BXD87)F1-Ntg both 57.0 3.4063 63.706 50.294
(B6.5XFAD x BXD89)F1-Ntg both 59.5 5.277 69.8889 49.1111
(B6.5XFAD x D2)F1-ADtg both 62.5 2.6005 67.6197 57.3803
(B6.5XFAD x D2)F1-Ntg both 66.8429 3.0899 72.926 60.7598




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA