Project measure / variable:   Graham1   NS4b_spleen_d28

ID, description, units MPD:63360   NS4b_spleen_d28   percentage of CD3+ T cells that are NS4b+ in spleen, post infection   [%]  day 28  
West Nile virus study
Data set, strains Graham1   CC RIX   2 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Graham1 - percentage of CD3+ T cells that are NS4b+ in spleen, post infection day 28



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested2 strains
Mean of the strain means1.227   %
Median of the strain means1.227   %
SD of the strain means± 1.4562
Coefficient of variation (CV)1.1868
Min–max range of strain means0.19733   –   2.2567   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 1 6.3613 6.3613 7.2058 0.055
Residuals 4 3.5312 0.8828


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(004 x 011) m 2.2567 1.3282   3 0.76686 0.5886 1.46, 3.79 0.71
RIX:CC(041 x 012) m 0.19733 0.0371   3 0.02142 0.188 0.157, 0.23 -0.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 2.2566666667 0.5424650014 3.7627909646 0.7505423687
RIX:CC(041 x 012) m 0.1973333333 0.5424650014 1.7034576313 -1.3087909646




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA