Project measure / variable:   Graham1   NS4b_spleen_d12

ID, description, units MPD:63358   NS4b_spleen_d12   percentage of CD3+ T cells that are NS4b+ in spleen, post infection   [%]  day 12  
West Nile virus study
Data set, strains Graham1   CC RIX   2 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Graham1 - percentage of CD3+ T cells that are NS4b+ in spleen, post infection day 12

RIX:CC(004 x 011)RIX:CC(041 x 012) % 0.40.60.81.01.21.41.61.82.02.2femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested2 strains
Mean of the strain means1.0835   %
Median of the strain means1.0835   %
SD of the strain means± 0.68333
Coefficient of variation (CV)0.6307
Min–max range of strain means0.60033   –   1.5667   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 1 1.4007 1.4007 7.0286 0.0569
Residuals 4 0.7971 0.1993


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
RIX:CC(004 x 011) m 1.5667 0.61044   3 0.35244 0.3896 1.11, 2.26 0.71
RIX:CC(041 x 012) m 0.60033 0.16105   3 0.09298 0.2683 0.489, 0.785 -0.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 1.5666666667 0.2577371616 2.2822597473 0.8510735861
RIX:CC(041 x 012) m 0.6003333333 0.2577371616 1.3159264139 -0.1152597473




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA