Project measure / variable:   Graham1   CD8_brain_d12

ID, description, units MPD:63346   CD8_brain_d12   percentage of CD3+ T cells that are CD8+ in brain, post infection   [%]  day 12  
West Nile virus study
Data set, strains Graham1   CC RIX   5 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Graham1 - percentage of CD3+ T cells that are CD8+ in brain, post infection day 12



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means38.923   %
Median of the strain means35.567   %
SD of the strain means± 15.491
Coefficient of variation (CV)0.398
Min–max range of strain means20.33   –   63.15   %
Mean sample size per strain2.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 3 2235.5285 745.1762 3.9885 0.06
Residuals 7 1307.8217 186.8317


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(004 x 011) m 40.367 20.533   3 11.855 0.5087 24.3, 63.5 0.09
RIX:CC(005 x 001) m 63.15 6.5761   2   4.65 0.1041 58.5, 67.8 1.56
RIX:CC(017 x 004) m 20.33 12.659   3 7.3087 0.6227 7.49, 32.8 -1.2
RIX:CC(024 x 023) m 35.2 0.0   1   0.0 0.0 35.2, 35.2 -0.24
RIX:CC(041 x 012) m 35.567 7.1009   3 4.0997 0.1997 28.4, 42.6 -0.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 40.3667 7.8916 59.0273 21.706
RIX:CC(005 x 001) m 63.15 9.6652 86.0045 40.2955
RIX:CC(017 x 004) m 20.33 7.8916 38.9906 1.6694
RIX:CC(041 x 012) m 35.5667 7.8916 54.2273 16.906




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA