Project measure / variable:   CSNA02   trial_latency_acq

ID, description, units MPD:62214   trial_latency_acq   latency to initiate trials divided by total number of trials   [s]  acquisition  
Data set, strains CSNA02   inbred   10 strains     sex: both     age: 12-14wks
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA02 - latency to initiate trials divided by total number of trials acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means60.3   s 43.254   s
Median of the strain means45.379   s 34.171   s
SD of the strain means± 37.36 ± 25.743
Coefficient of variation (CV)0.6196 0.5952
Min–max range of strain means19.29   –   128.0   s 16.574   –   99.09   s
Mean sample size per strain5.3   mice 4.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 9634.2188 9634.2188 3.907 0.0515
strain 9 78912.0746 8768.0083 3.5557 0.0009
sex:strain 9 26111.6448 2901.2939 1.1766 0.3213
Residuals 80 197271.3481 2465.8919


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 68.48 36.942   6 15.082 0.5395 20.799, 111.522 0.22
129S1/SvImJ m 76.77 50.59   6 20.652 0.6589 10.333, 152.101 1.3
A/J f 128.0 93.57   6 38.2 0.7311 23.803, 271.378 1.81
A/J m 99.09 76.13   6 31.078 0.7682 28.164, 215.314 2.17
C57BL/6J f 46.848 24.925   6 10.176 0.532 15.945, 85.959 -0.36
C57BL/6J m 30.863 6.2162   6 2.5378 0.2014 19.413, 36.782 -0.48
CAST/EiJ f 39.776 22.842   7 8.6334 0.5743 19.497, 82.535 -0.55
CAST/EiJ m 45.822 15.731   4 7.8654 0.3433 34.494, 68.984 0.1
CC004/TauUncJ f 19.29 10.865   2   7.6825 0.5632 11.607, 26.972 -1.1
CC004/TauUncJ m 44.146 43.5   3 25.115 0.9854 13.496, 93.934 0.03
CC041/TauUncJ f 56.4 32.13   3 18.55 0.5697 31.53, 92.677 -0.1
CC041/TauUncJ m 30.269 2.7516   3 1.5887 0.0909 27.439, 32.935 -0.5
NOD/ShiLtJ f 39.321 16.639   5 7.4412 0.4232 15.829, 60.693 -0.56
NOD/ShiLtJ m 35.985 11.173   5 4.9969 0.3105 16.004, 41.448 -0.28
NZO/HlLtJ f 125.7 109.6   7 41.411 0.8717 18.955, 270.4 1.75
NZO/HlLtJ m 20.66 3.4245   4 1.7123 0.1658 16.019, 24.165 -0.88
PWK/PhJ f 35.27 50.91   6 20.785 1.4435 10.878, 138.934 -0.67
PWK/PhJ m 16.574 7.1623   6 2.924 0.4321 7.396, 24.737 -1.04
WSB/EiJ f 43.909 31.98   5 14.302 0.7283 15.316, 98.616 -0.44
WSB/EiJ m 32.358 16.019   4 8.0094 0.495 18.471, 52.562 -0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 68.477 20.2727 108.8209 28.1331
129S1/SvImJ m 76.7718 20.2727 117.1158 36.4279
A/J f 127.9763 20.2727 168.3203 87.6324
A/J m 99.0905 20.2727 139.4344 58.7466
C57BL/6J f 46.8478 20.2727 87.1918 6.5039
C57BL/6J m 30.863 20.2727 71.2069 -9.4809
CAST/EiJ f 39.7763 18.7689 77.1275 2.4251
CAST/EiJ m 45.8218 24.8289 95.2328 -3.5893
CC004/TauUncJ f 19.2895 35.1133 89.1673 -50.5883
CC004/TauUncJ m 44.146 28.6699 101.2009 -12.9089
CC041/TauUncJ f 56.4007 28.6699 113.4556 -0.6543
CC041/TauUncJ m 30.2687 28.6699 87.3236 -26.7863
NOD/ShiLtJ f 39.321 22.2076 83.5156 -4.8736
NOD/ShiLtJ m 35.9846 22.2076 80.1792 -8.21
NZO/HlLtJ f 125.6887 18.7689 163.0399 88.3375
NZO/HlLtJ m 20.6595 24.8289 70.0705 -28.7515
PWK/PhJ f 35.2697 20.2727 75.6136 -5.0743
PWK/PhJ m 16.574 20.2727 56.9179 -23.7699
WSB/EiJ f 43.9086 22.2076 88.1032 -0.286
WSB/EiJ m 32.3583 24.8289 81.7693 -17.0528


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 72.6244 14.335 101.1519 44.0969
A/J both 113.5334 14.335 142.0609 85.0059
C57BL/6J both 38.8554 14.335 67.3829 10.3279
CAST/EiJ both 42.799 15.5623 73.769 11.829
CC004/TauUncJ both 31.7177 22.6656 76.8236 -13.3881
CC041/TauUncJ both 43.3347 20.2727 83.6786 2.9907
NOD/ShiLtJ both 37.6528 15.7032 68.9031 6.4025
NZO/HlLtJ both 73.1741 15.5623 104.1441 42.2041
PWK/PhJ both 25.9218 14.335 54.4493 -2.6056
WSB/EiJ both 38.1334 16.6557 71.2794 4.9875




  GWAS USING LINEAR MIXED MODELS