Project measure / variable:   CSNA02   pokes_incorr_rev

ID, description, units MPD:62211   pokes_incorr_rev   number of anticipatory nose pokes made in incorrect flanking hole during reversal learning   [n]  reversal  
Data set, strains CSNA02   inbred   10 strains     sex: both     age: 12-14wks
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA02 - number of anticipatory nose pokes made in incorrect flanking hole during reversal learning reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1.0293   n 0.69966   n
Median of the strain means0.97165   n 0.63125   n
SD of the strain means± 0.66514 ± 0.32557
Coefficient of variation (CV)0.6462 0.4653
Min–max range of strain means0.23   –   2.4014   n 0.22667   –   1.2917   n
Mean sample size per strain5.2   mice 4.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.5782 2.5782 4.7743 0.0319
strain 9 24.3125 2.7014 5.0023 < 0.0001
sex:strain 9 5.8196 0.6466 1.1974 0.3088
Residuals 78 42.1224 0.54


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.3067 0.73918   6 0.30177 0.5657 0.46, 2.5 0.42
129S1/SvImJ m 1.2917 0.85167   6 0.34769 0.6594 0.11, 2.66 1.82
A/J f 1.425 0.73883   6 0.30163 0.5185 0.5, 2.24 0.59
A/J m 1.1017 0.41024   6 0.16748 0.3724 0.51, 1.62 1.23
C57BL/6J f 1.1583 0.74438   6 0.30389 0.6426 0.46, 2.55 0.19
C57BL/6J m 0.85667 0.6665   6 0.2721 0.778 0.25, 2.1 0.48
CAST/EiJ f 0.23 0.1787   7 0.06754 0.777 -1.2
CAST/EiJ m 0.4275 0.1223   4 0.06115 0.2861 0.35, 0.61 -0.84
CC004/TauUncJ f 0.7 0.46669   2   0.33 0.6667 0.37, 1.03 -0.5
CC004/TauUncJ m 0.43333 0.19553   3 0.11289 0.4512 0.27, 0.65 -0.82
CC041/TauUncJ f 1.4933 1.3582   3 0.78414 0.9095 0.55, 3.05 0.7
CC041/TauUncJ m 0.67 0.41012   2   0.29 0.6121 0.38, 0.96 -0.09
NOD/ShiLtJ f 0.785 0.4232   4 0.2116 0.5391 0.46, 1.39 -0.37
NOD/ShiLtJ m 0.564 0.35047   5 0.15674 0.6214 0.17, 1.12 -0.42
NZO/HlLtJ f 2.4014 1.8571   7 0.70193 0.7733 0.15, 5.33 2.06
NZO/HlLtJ m 0.8325 0.23866   4 0.11933 0.2867 0.7, 1.19 0.41
PWK/PhJ f 0.28167 0.22921   6 0.09357 0.8138 0.05, 0.61 -1.12
PWK/PhJ m 0.22667 0.10985   6 0.04485 0.4846 0.08, 0.41 -1.45
WSB/EiJ f 0.512 0.22399   5 0.10017 0.4375 0.27, 0.76 -0.78
WSB/EiJ m 0.5925 0.36344   4 0.18172 0.6134 0.2, 1.08 -0.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.3067 0.3 1.9039 0.7094
129S1/SvImJ m 1.2917 0.3 1.8889 0.6944
A/J f 1.425 0.3 2.0223 0.8277
A/J m 1.1017 0.3 1.6989 0.5044
C57BL/6J f 1.1583 0.3 1.7556 0.5611
C57BL/6J m 0.8567 0.3 1.4539 0.2594
CAST/EiJ f 0.23 0.2778 0.783 -0.323
CAST/EiJ m 0.4275 0.3674 1.159 -0.304
CC004/TauUncJ f 0.7 0.5196 1.7345 -0.3345
CC004/TauUncJ m 0.4333 0.4243 1.278 -0.4113
CC041/TauUncJ f 1.4933 0.4243 2.338 0.6487
CC041/TauUncJ m 0.67 0.5196 1.7045 -0.3645
NOD/ShiLtJ f 0.785 0.3674 1.5165 0.0535
NOD/ShiLtJ m 0.564 0.3286 1.2183 -0.0903
NZO/HlLtJ f 2.4014 0.2778 2.9544 1.8485
NZO/HlLtJ m 0.8325 0.3674 1.564 0.101
PWK/PhJ f 0.2817 0.3 0.8789 -0.3156
PWK/PhJ m 0.2267 0.3 0.8239 -0.3706
WSB/EiJ f 0.512 0.3286 1.1663 -0.1423
WSB/EiJ m 0.5925 0.3674 1.324 -0.139


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.2992 0.2121 1.7215 0.8768
A/J both 1.2633 0.2121 1.6857 0.841
C57BL/6J both 1.0075 0.2121 1.4298 0.5852
CAST/EiJ both 0.3287 0.2303 0.7872 -0.1297
CC004/TauUncJ both 0.5667 0.3354 1.2344 -0.1011
CC041/TauUncJ both 1.0817 0.3354 1.7494 0.4139
NOD/ShiLtJ both 0.6745 0.2465 1.1652 0.1838
NZO/HlLtJ both 1.617 0.2303 2.0755 1.1585
PWK/PhJ both 0.2542 0.2121 0.6765 -0.1682
WSB/EiJ both 0.5522 0.2465 1.043 0.0615




  GWAS USING LINEAR MIXED MODELS