Project measure / variable:   CSNA02   locomotor_d2

ID, description, units MPD:62202   locomotor_d2   distance traveled, 40 min test   [cm]  day 2  
Data set, strains CSNA02   inbred   10 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA02 - distance traveled, 40 min test day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means5848.0   cm 4375.0   cm
Median of the strain means6258.0   cm 5527.0   cm
SD of the strain means± 4213.0 ± 2577.0
Coefficient of variation (CV)0.7205 0.5892
Min–max range of strain means1226.0   –   13450.0   cm 964.9   –   7557.0   cm
Mean sample size per strain8.4   mice 8.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 73840240.6291 73840240.6291 9.2757 0.0028
strain 9 1540468163.6893 171163129.2988 21.5012 < 0.0001
sex:strain 9 171667240.9105 19074137.8789 2.3961 0.0146
Residuals 147 1170213025.3322 7960632.8254


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1379.0 1436.0   9 478.6 1.0414 19.4, 4277.4 -1.06
129S1/SvImJ m 1427.0 983.1   9 327.7 0.6891 190.1, 3021.01 -1.14
A/J f 1226.0 829.4   9 276.5 0.6767 327.79, 2718.61 -1.1
A/J m 964.9 672.2   9 224.1 0.6966 504.6, 2587.95 -1.32
C57BL/6J f 5596.0 1608.0   9 536.0 0.2873 3130.03, 7445.5 -0.06
C57BL/6J m 6030.0 1636.0   9 545.2 0.2713 3618.36, 8029.64 0.64
CAST/EiJ f 6919.0 1016.0   9 338.6 0.1468 5880.4, 9214.48 0.25
CAST/EiJ m 5437.0 1353.0   9 450.9 0.2488 3158.59, 7268.7 0.41
CC004/TauUncJ f 13450.0 11936.0   6 4873.0 0.8874 5059.73, 33974.13 1.8
CC004/TauUncJ m 5617.0 853.6   6 348.5 0.152 4812.27, 6923.08 0.48
CC041/TauUncJ f 1737.0 479.6   6 195.8 0.2761 1218.54, 2600.8 -0.98
CC041/TauUncJ m 1564.0 811.7   6 331.4 0.519 658.9, 2938.9 -1.09
NOD/ShiLtJ f 9335.0 3341.0   9 1114.0 0.3579 4336.29, 14853.91 0.83
NOD/ShiLtJ m 7557.0 3685.0   8 1303.0 0.4877 2255.8, 13244.55 1.23
NZO/HlLtJ f 1852.0 480.7   9 160.2 0.2596 892.68, 2354.75 -0.95
NZO/HlLtJ m 1959.0 953.5   9 317.8 0.4867 976.75, 3754.47 -0.94
PWK/PhJ f 8951.0 2059.0   9 686.2 0.23 6494.38, 12504.24 0.74
PWK/PhJ m 7008.0 1376.0   9 458.8 0.1964 5161.2, 9223.21 1.02
WSB/EiJ f 8030.0 3471.0   9 1157.0 0.4323 4866.6, 16906.81 0.52
WSB/EiJ m 6182.0 1252.0   9 417.3 0.2025 5252.5, 8740.31 0.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1378.6489 940.4864 3237.2695 -479.9718
129S1/SvImJ m 1426.5778 940.4864 3285.1984 -432.0429
A/J f 1225.5856 940.4864 3084.2062 -633.0351
A/J m 964.8589 940.4864 2823.4795 -893.7618
C57BL/6J f 5596.3989 940.4864 7455.0195 3737.7782
C57BL/6J m 6029.8456 940.4864 7888.4662 4171.2249
CAST/EiJ f 6918.98 940.4864 8777.6006 5060.3594
CAST/EiJ m 5437.2311 940.4864 7295.8518 3578.6105
CC004/TauUncJ f 13450.33 1151.856 15726.6661 11173.9939
CC004/TauUncJ m 5616.71 1151.856 7893.0461 3340.3739
CC041/TauUncJ f 1736.8967 1151.856 4013.2328 -539.4394
CC041/TauUncJ m 1563.9733 1151.856 3840.3094 -712.3628
NOD/ShiLtJ f 9335.06 940.4864 11193.6806 7476.4394
NOD/ShiLtJ m 7556.8738 997.5365 9528.2386 5585.5089
NZO/HlLtJ f 1852.0956 940.4864 3710.7162 -6.5251
NZO/HlLtJ m 1959.1522 940.4864 3817.7729 100.5316
PWK/PhJ f 8950.8311 940.4864 10809.4518 7092.2105
PWK/PhJ m 7008.2433 940.4864 8866.864 5149.6227
WSB/EiJ f 8030.4044 940.4864 9889.0251 6171.7838
WSB/EiJ m 6181.8689 940.4864 8040.4895 4323.2482


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1402.6133 665.0243 2716.8566 88.3701
A/J both 1095.2222 665.0243 2409.4655 -219.021
C57BL/6J both 5813.1222 665.0243 7127.3655 4498.879
CAST/EiJ both 6178.1056 665.0243 7492.3488 4863.8623
CC004/TauUncJ both 9533.52 814.4852 11143.1327 7923.9073
CC041/TauUncJ both 1650.435 814.4852 3260.0477 40.8223
NOD/ShiLtJ both 8445.9669 685.4914 9800.6578 7091.2759
NZO/HlLtJ both 1905.6239 665.0243 3219.8672 591.3806
PWK/PhJ both 7979.5372 665.0243 9293.7805 6665.294
WSB/EiJ both 7106.1367 665.0243 8420.3799 5791.8934




  GWAS USING LINEAR MIXED MODELS