Project measure / variable:   CSNA02   locomotor_d1

ID, description, units MPD:62201   locomotor_d1   distance traveled, 40 min test   [cm]  day 1  
Data set, strains CSNA02   inbred   10 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA02 - distance traveled, 40 min test day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means5933.0   cm 5074.0   cm
Median of the strain means7552.0   cm 6376.0   cm
SD of the strain means± 4015.0 ± 2936.0
Coefficient of variation (CV)0.6767 0.5786
Min–max range of strain means926.6   –   10851.0   cm 1148.0   –   9499.0   cm
Mean sample size per strain8.3   mice 8.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 22487450.1552 22487450.1552 4.091 0.0449
strain 9 1702423807.0379 189158200.782 34.4121 < 0.0001
sex:strain 9 93998118.5316 10444235.3924 1.9 0.0562
Residuals 146 802540086.4735 5496849.9074


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 926.6 715.2   9 238.4 0.7718 84.68, 2058.48 -1.25
129S1/SvImJ m 1945.0 1412.0   9 470.6 0.7258 135.0, 4118.99 -1.07
A/J f 1126.0 732.3   9 244.1 0.6506 107.7, 2347.47 -1.2
A/J m 1148.0 807.4   9 269.1 0.7032 496.9, 2907.05 -1.34
C57BL/6J f 7842.0 2175.0   9 724.9 0.2773 5640.88, 11587.9 0.48
C57BL/6J m 7095.0 1455.0   9 485.0 0.2051 5177.32, 8767.41 0.69
CAST/EiJ f 7261.0 1215.0   9 405.0 0.1673 5383.2, 9460.22 0.33
CAST/EiJ m 6825.0 766.8   9 255.6 0.1123 5273.2, 7944.33 0.6
CC004/TauUncJ f 10851.0 8449.0   5 3779.0 0.7786 5368.61, 25812.52 1.22
CC004/TauUncJ m 5927.0 560.1   6 228.7 0.0945 5182.53, 6531.76 0.29
CC041/TauUncJ f 1705.0 260.8   6 106.5 0.1529 1363.32, 2015.06 -1.05
CC041/TauUncJ m 1674.0 112.7   6 46.006 0.0673 1469.7, 1766.7 -1.16
NOD/ShiLtJ f 9737.0 4447.0   9 1482.0 0.4566 5426.57, 19059.6 0.95
NOD/ShiLtJ m 9499.0 4327.0   8 1530.0 0.4556 6259.48, 19377.49 1.51
NZO/HlLtJ f 1976.0 440.7   9 146.9 0.223 1400.79, 2545.59 -0.99
NZO/HlLtJ m 2633.0 904.1   9 301.4 0.3433 1407.23, 3950.25 -0.83
PWK/PhJ f 8220.0 1261.0   9 420.3 0.1534 6372.2, 10547.4 0.57
PWK/PhJ m 6984.0 1194.0   9 397.9 0.1709 4735.79, 8769.24 0.65
WSB/EiJ f 9686.0 3126.0   9 1042.0 0.3227 7294.65, 17150.06 0.93
WSB/EiJ m 7010.0 1350.0   9 449.9 0.1925 5459.3, 9223.28 0.66


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 926.6211 781.5121 2471.1591 -617.9169
129S1/SvImJ m 1945.0244 781.5121 3489.5624 400.4865
A/J f 1125.7144 781.5121 2670.2524 -418.8235
A/J m 1148.1044 781.5121 2692.6424 -396.4335
C57BL/6J f 7842.4044 781.5121 9386.9424 6297.8665
C57BL/6J m 7094.9722 781.5121 8639.5102 5550.4343
CAST/EiJ f 7260.7344 781.5121 8805.2724 5716.1965
CAST/EiJ m 6825.4967 781.5121 8370.0346 5280.9587
CC004/TauUncJ f 10851.028 1048.5085 12923.2431 8778.8129
CC004/TauUncJ m 5926.815 957.1529 7818.48 4035.15
CC041/TauUncJ f 1705.3317 957.1529 3596.9966 -186.3333
CC041/TauUncJ m 1673.86 957.1529 3565.525 -217.805
NOD/ShiLtJ f 9737.4244 781.5121 11281.9624 8192.8865
NOD/ShiLtJ m 9498.6637 828.9187 11136.8937 7860.4338
NZO/HlLtJ f 1976.2911 781.5121 3520.8291 431.7531
NZO/HlLtJ m 2633.2433 781.5121 4177.7813 1088.7054
PWK/PhJ f 8219.7011 781.5121 9764.2391 6675.1631
PWK/PhJ m 6984.1111 781.5121 8528.6491 5439.5731
WSB/EiJ f 9685.8922 781.5121 11230.4302 8141.3543
WSB/EiJ m 7010.0722 781.5121 8554.6102 5465.5343


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1435.8228 552.6125 2527.976 343.6695
A/J both 1136.9094 552.6125 2229.0627 44.7562
C57BL/6J both 7468.6883 552.6125 8560.8416 6376.5351
CAST/EiJ both 7043.1156 552.6125 8135.2688 5950.9623
CC004/TauUncJ both 8388.9215 709.8436 9791.8178 6986.0252
CC041/TauUncJ both 1689.5958 676.8093 3027.2049 351.9867
NOD/ShiLtJ both 9618.0441 569.6199 10743.8099 8492.2783
NZO/HlLtJ both 2304.7672 552.6125 3396.9205 1212.614
PWK/PhJ both 7601.9061 552.6125 8694.0594 6509.7528
WSB/EiJ both 8347.9822 552.6125 9440.1355 7255.829




  GWAS USING LINEAR MIXED MODELS