Project measure / variable:   Crusio1   rad_pct_mean

ID, description, units MPD:62079   rad_pct_mean   percentage of hippocampus that is stratum radiatum   [%]  mean  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is stratum radiatum mean



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means26.078   % 26.532   %
Median of the strain means26.291   % 26.51   %
SD of the strain means± 1.0607 ± 1.1854
Coefficient of variation (CV)0.0407 0.0447
Min–max range of strain means23.219   –   28.248   % 23.816   –   29.311   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 7.6143 7.6143 6.0537 0.0144
strain 47 426.7063 9.0789 7.2182 < 0.0001
sex:strain 47 52.2349 1.1114 0.8836 0.6904
Residuals 343 431.4188 1.2578


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 26.674 0.0   1   0.0 0.0 26.67434041, 26.67434041 0.56
BXD1 m 28.13 0.0   1   0.0 0.0 28.12965665, 28.12965665 1.35
BXD100 f 26.88 0.99076   5 0.44308 0.0369 25.74953993, 28.11140732 0.76
BXD100 m 26.808 1.128   5 0.50447 0.0421 25.38920453, 28.33427434 0.23
BXD101 f 26.6 0.80682   3 0.46582 0.0303 26.08886534, 27.5302923 0.49
BXD101 m 26.293 0.47178   4 0.23589 0.0179 25.59498945, 26.623698 -0.2
BXD102 f 25.891 1.0452   5 0.46742 0.0404 24.98850375, 27.66837905 -0.18
BXD102 m 25.395 0.95317   5 0.42627 0.0375 24.55950855, 26.77106929 -0.96
BXD11 f 25.634 0.97008   5 0.43383 0.0378 24.19520665, 26.58604628 -0.42
BXD11 m 26.582 1.4533   5 0.64995 0.0547 24.57617792, 28.68171916 0.04
BXD13 f 24.453 0.67702   5 0.30277 0.0277 23.32416077, 25.11761371 -1.53
BXD13 m 24.996 0.95129   5 0.42543 0.0381 23.49446926, 26.03863838 -1.3
BXD14 f 27.014 1.1246   5 0.50293 0.0416 25.23853949, 27.97442403 0.88
BXD14 m 27.199 0.44201   5 0.19767 0.0163 26.59235063, 27.63058253 0.56
BXD15 f 26.05 0.73997   5 0.33092 0.0284 25.16367744, 26.99540016 -0.03
BXD15 m 26.936 0.67898   5 0.30365 0.0252 26.55078504, 28.13461882 0.34
BXD16 f 25.76 2.061   5 0.92171 0.08 22.8459619, 28.27837383 -0.3
BXD16 m 25.669 1.4245   5 0.63706 0.0555 23.3941849, 26.96891397 -0.73
BXD18 f 27.559 0.0   1   0.0 0.0 27.55887906, 27.55887906 1.4
BXD18 m 26.482 0.0   1   0.0 0.0 26.48215307, 26.48215307 -0.04
BXD19 f 23.219 0.0   1   0.0 0.0 23.21878145, 23.21878145 -2.7
BXD19 m 27.137 0.0   1   0.0 0.0 27.13742507, 27.13742507 0.51
BXD2 f 28.248 1.325   5 0.59255 0.0469 26.16079805, 29.65100191 2.05
BXD2 m 28.171 1.6954   5 0.7582 0.0602 26.30941146, 30.93028612 1.38
BXD21 f 24.826 0.46291   5 0.20702 0.0186 24.17334442, 25.33922082 -1.18
BXD21 m 25.506 0.53712   6 0.21928 0.0211 24.92105613, 26.4355233 -0.87
BXD27 f 28.069 1.1436   5 0.51144 0.0407 27.0818453, 29.96698591 1.88
BXD27 m 27.68 0.99637   5 0.44559 0.036 26.77279289, 29.18273541 0.97
BXD28 f 27.312 1.0991   5 0.49151 0.0402 26.06873628, 29.06790983 1.16
BXD28 m 27.87 0.95135   5 0.42546 0.0341 26.82027466, 29.37297551 1.13
BXD31 f 26.506 1.0195   5 0.45592 0.0385 25.43129607, 27.82791091 0.4
BXD31 m 26.48 0.80219   4 0.40109 0.0303 25.42647249, 27.30411211 -0.04
BXD32 f 26.414 0.50756   5 0.22699 0.0192 25.87645007, 27.20657125 0.32
BXD32 m 25.88 1.8278   5 0.81742 0.0706 23.13903122, 27.70745033 -0.55
BXD33 m 26.975 0.0   1   0.0 0.0 26.97521839, 26.97521839 0.37
BXD34 f 26.377 0.0   1   0.0 0.0 26.37656972, 26.37656972 0.28
BXD34 m 28.4 0.0   1   0.0 0.0 28.40046272, 28.40046272 1.58
BXD39 f 26.012 1.1181   5 0.50004 0.043 24.88710562, 27.64078659 -0.06
BXD39 m 26.813 0.85605   5 0.38284 0.0319 25.45160497, 27.66159518 0.24
BXD40 f 25.474 0.56712   5 0.25362 0.0223 24.80799047, 25.97955781 -0.57
BXD40 m 25.89 0.60298   5 0.26966 0.0233 25.20029199, 26.76812184 -0.54
BXD42 f 24.856 1.072   5 0.47941 0.0431 23.68516624, 26.46728979 -1.15
BXD42 m 25.058 0.61799   5 0.27637 0.0247 24.41229681, 26.03298756 -1.24
BXD43 f 27.551 1.175   5 0.52548 0.0426 25.97547277, 29.00427261 1.39
BXD43 m 28.211 1.382   5 0.61803 0.049 25.90578678, 29.50857903 1.42
BXD44 f 26.153 1.0393   5 0.46477 0.0397 24.57426635, 27.10574299 0.07
BXD44 m 25.377 0.84667   5 0.37864 0.0334 23.97942333, 26.25093535 -0.97
BXD48 f 26.295 0.78325   5 0.35028 0.0298 25.17535215, 27.27414612 0.2
BXD48 m 26.686 1.3456   5 0.60177 0.0504 25.59005885, 28.89324924 0.13
BXD49 f 25.285 0.99729   4 0.49864 0.0394 24.08702422, 26.52289961 -0.75
BXD49 m 26.51 1.2292   5 0.54971 0.0464 25.16053843, 28.3722386 -0.02
BXD50 f 26.381 0.53345   5 0.23857 0.0202 25.52669186, 26.96736861 0.29
BXD50 m 26.299 1.0523   5 0.47059 0.04 24.77296963, 27.51430321 -0.2
BXD51 f 27.081 1.0469   5 0.4682 0.0387 25.62682545, 28.30031298 0.95
BXD51 m 26.946 1.2026   5 0.53783 0.0446 25.5138341, 28.65085194 0.35
BXD6 f 26.363 0.33918   5 0.15168 0.0129 25.99689592, 26.87794814 0.27
BXD6 m 25.967 0.74037   4 0.37018 0.0285 25.127401, 26.92582249 -0.48
BXD61 f 25.141 0.47911   5 0.21426 0.0191 24.47460628, 25.64556372 -0.88
BXD61 m 23.816 1.7482   5 0.7818 0.0734 20.76962754, 24.97170127 -2.29
BXD62 f 24.241 1.1826   5 0.52886 0.0488 22.65293074, 25.96896853 -1.73
BXD62 m 25.541 1.1039   5 0.49367 0.0432 23.85995065, 26.8516561 -0.84
BXD65 f 24.909 1.4846   3 0.85714 0.0596 23.19514394, 25.79862851 -1.1
BXD65 m 25.803 0.92811   5 0.41506 0.036 24.22227883, 26.61024033 -0.62
BXD66 f 25.87 0.01538   2   0.01087 0.0006 25.85924346, 25.88098966 -0.2
BXD66 m 26.599 0.36956   2   0.26132 0.0139 26.33719048, 26.85982275 0.06
BXD68 f 26.97 0.04775   2   0.03377 0.0018 26.93646477, 27.00399662 0.84
BXD68 m 28.497 1.0718   3 0.61879 0.0376 27.26103783, 29.16761553 1.66
BXD69 f 26.492 0.99971   4 0.49985 0.0377 25.17802404, 27.27327387 0.39
BXD69 m 25.947 1.2292   5 0.54974 0.0474 24.47989341, 27.3958467 -0.49
BXD70 f 26.677 1.1183   5 0.50013 0.0419 25.47841121, 28.52174147 0.56
BXD70 m 26.334 0.50619   5 0.22637 0.0192 25.70010989, 27.08632708 -0.17
BXD71 m 29.311 0.0   1   0.0 0.0 29.31096722, 29.31096722 2.34
BXD73 f 26.43 1.8771   5 0.83948 0.071 23.8827167, 28.7580258 0.33
BXD73 m 26.007 1.114   5 0.49819 0.0428 24.85152149, 27.69917136 -0.44
BXD75 f 26.394 1.1674   5 0.52208 0.0442 25.23099706, 28.32305637 0.3
BXD75 m 25.852 1.4986   5 0.67018 0.058 23.54682656, 27.70743168 -0.57
BXD77 f 26.517 0.90298   2   0.6385 0.0341 25.87826827, 27.15526795 0.41
BXD77 m 26.863 1.5557   2   1.1 0.0579 25.7626428, 27.96271773 0.28
BXD8 f 23.588 1.4229   5 0.63635 0.0603 21.63891412, 25.6188159 -2.35
BXD8 m 24.033 0.6903   5 0.30871 0.0287 23.39019564, 24.83964144 -2.11
BXD80 f 27.772 0.98861   5 0.44212 0.0356 26.31302939, 28.8058338 1.6
BXD80 m 28.286 1.3574   5 0.60703 0.048 26.87234964, 29.90440142 1.48
BXD81 f 25.273 1.5511   5 0.69367 0.0614 22.89185538, 26.95284504 -0.76
BXD81 m 25.686 0.72863   5 0.32585 0.0284 25.05484311, 26.91113053 -0.71
BXD84 f 26.017 0.92116   5 0.41195 0.0354 24.88835068, 26.91189304 -0.06
BXD84 m 26.047 1.6706   5 0.74712 0.0641 24.21779457, 28.26884081 -0.41
BXD85 f 26.116 0.06717   2   0.0475 0.0026 26.06807947, 26.16307527 0.04
BXD85 m 27.922 0.33212   2   0.23484 0.0119 27.68685149, 28.15654132 1.17
BXD86 f 25.979 1.2117   5 0.5419 0.0466 24.556914, 27.51491713 -0.09
BXD86 m 26.875 1.1388   4 0.56942 0.0424 25.53640297, 28.20842988 0.29
BXD87 f 27.153 1.0749   5 0.48072 0.0396 25.71377392, 28.56954067 1.01
BXD87 m 27.43 0.98487   5 0.44045 0.0359 26.12625094, 28.62617265 0.76
BXD89 f 27.166 1.9777   5 0.88444 0.0728 24.61211016, 29.35802133 1.03
BXD89 m 26.734 1.205   5 0.5389 0.0451 24.69169876, 27.708474 0.17
BXD90 f 24.81 0.71718   3 0.41406 0.0289 24.14236506, 25.56803342 -1.2
BXD90 m 24.308 1.4044   3 0.81081 0.0578 22.86354311, 25.66850413 -1.88
BXD92 f 24.773 0.0   1   0.0 0.0 24.7728623, 24.7728623 -1.23
BXD92 m 24.583 0.0   1   0.0 0.0 24.58296133, 24.58296133 -1.64
BXD96 f 25.273 0.94257   5 0.42153 0.0373 24.3776509, 26.72568743 -0.76
BXD96 m 26.349 1.0396   5 0.46493 0.0395 25.5240763, 27.88237201 -0.15
BXD97 f 25.417 2.2027   5 0.98506 0.0867 22.55721447, 27.51699264 -0.62
BXD97 m 27.238 0.80139   4 0.40069 0.0294 26.72577926, 28.43375731 0.6
BXD98 f 26.291 0.24498   2   0.17322 0.0093 26.11773846, 26.46418778 0.2
BXD98 m 27.049 1.3515   4 0.67573 0.05 26.03185323, 28.99527678 0.44
C57BL/6J f 25.255 0.91322   5 0.4084 0.0362 24.5164231, 26.80118663 -0.78
C57BL/6J m 25.369 1.3263   5 0.59312 0.0523 23.99971773, 27.26563087 -0.98
DBA/2J f 26.697 0.74638   5 0.33379 0.028 25.50268914, 27.54427412 0.58
DBA/2J m 28.454 0.6459   5 0.28886 0.0227 27.59925011, 29.1821206 1.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 26.8798 0.5016 27.8663 25.8933
BXD100 m 26.8077 0.5016 27.7942 25.8211
BXD101 f 26.6002 0.6475 27.8738 25.3266
BXD101 m 26.2935 0.5608 27.3964 25.1905
BXD102 f 25.8909 0.5016 26.8774 24.9044
BXD102 m 25.3954 0.5016 26.3819 24.4089
BXD11 f 25.634 0.5016 26.6205 24.6475
BXD11 m 26.5822 0.5016 27.5687 25.5957
BXD13 f 24.4527 0.5016 25.4392 23.4662
BXD13 m 24.9955 0.5016 25.982 24.009
BXD14 f 27.0145 0.5016 28.001 26.028
BXD14 m 27.1989 0.5016 28.1854 26.2124
BXD15 f 26.0504 0.5016 27.0369 25.0638
BXD15 m 26.9359 0.5016 27.9225 25.9494
BXD16 f 25.7597 0.5016 26.7462 24.7732
BXD16 m 25.6693 0.5016 26.6558 24.6828
BXD2 f 28.248 0.5016 29.2345 27.2615
BXD2 m 28.1709 0.5016 29.1574 27.1844
BXD21 f 24.8263 0.5016 25.8128 23.8398
BXD21 m 25.5061 0.4579 26.4066 24.6055
BXD27 f 28.0686 0.5016 29.0551 27.0821
BXD27 m 27.6797 0.5016 28.6662 26.6932
BXD28 f 27.3123 0.5016 28.2988 26.3258
BXD28 m 27.8698 0.5016 28.8563 26.8833
BXD31 f 26.5057 0.5016 27.4922 25.5192
BXD31 m 26.4798 0.5608 27.5827 25.3768
BXD32 f 26.4139 0.5016 27.4004 25.4274
BXD32 m 25.8803 0.5016 26.8668 24.8938
BXD39 f 26.0119 0.5016 26.9984 25.0254
BXD39 m 26.8128 0.5016 27.7993 25.8263
BXD40 f 25.4738 0.5016 26.4603 24.4873
BXD40 m 25.8896 0.5016 26.8761 24.9031
BXD42 f 24.8561 0.5016 25.8426 23.8696
BXD42 m 25.0579 0.5016 26.0444 24.0714
BXD43 f 27.5511 0.5016 28.5377 26.5646
BXD43 m 28.2114 0.5016 29.1979 27.2248
BXD44 f 26.1532 0.5016 27.1398 25.1667
BXD44 m 25.3769 0.5016 26.3634 24.3904
BXD48 f 26.2955 0.5016 27.282 25.3089
BXD48 m 26.6859 0.5016 27.6724 25.6994
BXD49 f 25.2849 0.5608 26.3878 24.1819
BXD49 m 26.5101 0.5016 27.4966 25.5236
BXD50 f 26.3815 0.5016 27.368 25.395
BXD50 m 26.2993 0.5016 27.2858 25.3128
BXD51 f 27.0806 0.5016 28.0671 26.0941
BXD51 m 26.9462 0.5016 27.9327 25.9597
BXD6 f 26.3632 0.5016 27.3497 25.3767
BXD6 m 25.9675 0.5608 27.0704 24.8645
BXD61 f 25.1408 0.5016 26.1273 24.1543
BXD61 m 23.8157 0.5016 24.8022 22.8291
BXD62 f 24.2407 0.5016 25.2272 23.2542
BXD62 m 25.5414 0.5016 26.5279 24.5549
BXD65 f 24.909 0.6475 26.1826 23.6354
BXD65 m 25.8032 0.5016 26.7897 24.8167
BXD66 f 25.8701 0.793 27.4299 24.3103
BXD66 m 26.5985 0.793 28.1583 25.0387
BXD68 f 26.9702 0.793 28.53 25.4104
BXD68 m 28.4971 0.6475 29.7707 27.2236
BXD69 f 26.4916 0.5608 27.5946 25.3887
BXD69 m 25.9466 0.5016 26.9331 24.9601
BXD70 f 26.6768 0.5016 27.6633 25.6903
BXD70 m 26.3343 0.5016 27.3208 25.3478
BXD73 f 26.43 0.5016 27.4165 25.4435
BXD73 m 26.007 0.5016 26.9935 25.0205
BXD75 f 26.3942 0.5016 27.3807 25.4077
BXD75 m 25.8522 0.5016 26.8387 24.8657
BXD77 f 26.5168 0.793 28.0766 24.957
BXD77 m 26.8627 0.793 28.4225 25.3029
BXD8 f 23.5882 0.5016 24.5747 22.6017
BXD8 m 24.0334 0.5016 25.0199 23.0469
BXD80 f 27.7722 0.5016 28.7587 26.7857
BXD80 m 28.2863 0.5016 29.2728 27.2998
BXD81 f 25.2728 0.5016 26.2593 24.2863
BXD81 m 25.6864 0.5016 26.6729 24.6999
BXD84 f 26.0168 0.5016 27.0033 25.0303
BXD84 m 26.0472 0.5016 27.0337 25.0607
BXD85 f 26.1156 0.793 27.6754 24.5558
BXD85 m 27.9217 0.793 29.4815 26.3619
BXD86 f 25.9789 0.5016 26.9654 24.9924
BXD86 m 26.8746 0.5608 27.9776 25.7717
BXD87 f 27.1532 0.5016 28.1397 26.1667
BXD87 m 27.4304 0.5016 28.4169 26.4439
BXD89 f 27.1657 0.5016 28.1522 26.1792
BXD89 m 26.734 0.5016 27.7205 25.7474
BXD90 f 24.8097 0.6475 26.0833 23.5361
BXD90 m 24.308 0.6475 25.5816 23.0345
BXD96 f 25.2731 0.5016 26.2596 24.2866
BXD96 m 26.3485 0.5016 27.335 25.362
BXD97 f 25.4169 0.5016 26.4034 24.4303
BXD97 m 27.2378 0.5608 28.3407 26.1348
BXD98 f 26.291 0.793 27.8508 24.7312
BXD98 m 27.0491 0.5608 28.1521 25.9462
C57BL/6J f 25.2552 0.5016 26.2417 24.2687
C57BL/6J m 25.3688 0.5016 26.3553 24.3823
DBA/2J f 26.6974 0.5016 27.6839 25.7109
DBA/2J m 28.4539 0.5016 29.4404 27.4674


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 26.8437 0.3547 27.5413 26.1462
BXD101 both 26.4468 0.4283 27.2892 25.6044
BXD102 both 25.6432 0.3547 26.3407 24.9456
BXD11 both 26.1081 0.3547 26.8057 25.4105
BXD13 both 24.7241 0.3547 25.4217 24.0265
BXD14 both 27.1067 0.3547 27.8042 26.4091
BXD15 both 26.4931 0.3547 27.1907 25.7956
BXD16 both 25.7145 0.3547 26.4121 25.0169
BXD2 both 28.2095 0.3547 28.907 27.5119
BXD21 both 25.1662 0.3396 25.8341 24.4983
BXD27 both 27.8741 0.3547 28.5717 27.1766
BXD28 both 27.591 0.3547 28.2886 26.8935
BXD31 both 26.4927 0.3762 27.2326 25.7529
BXD32 both 26.1471 0.3547 26.8447 25.4495
BXD39 both 26.4123 0.3547 27.1099 25.7148
BXD40 both 25.6817 0.3547 26.3792 24.9841
BXD42 both 24.957 0.3547 25.6546 24.2595
BXD43 both 27.8812 0.3547 28.5788 27.1837
BXD44 both 25.7651 0.3547 26.4627 25.0675
BXD48 both 26.4907 0.3547 27.1883 25.7931
BXD49 both 25.8975 0.3762 26.6373 25.1576
BXD50 both 26.3404 0.3547 27.038 25.6428
BXD51 both 27.0134 0.3547 27.7109 26.3158
BXD6 both 26.1653 0.3762 26.9052 25.4255
BXD61 both 24.4782 0.3547 25.1758 23.7807
BXD62 both 24.8911 0.3547 25.5886 24.1935
BXD65 both 25.3561 0.4095 26.1616 24.5506
BXD66 both 26.2343 0.5608 27.3373 25.1314
BXD68 both 27.7337 0.5119 28.7405 26.7268
BXD69 both 26.2191 0.3762 26.959 25.4792
BXD70 both 26.5055 0.3547 27.2031 25.808
BXD73 both 26.2185 0.3547 26.9161 25.5209
BXD75 both 26.1232 0.3547 26.8208 25.4257
BXD77 both 26.6897 0.5608 27.7927 25.5868
BXD8 both 23.8108 0.3547 24.5083 23.1132
BXD80 both 28.0292 0.3547 28.7268 27.3317
BXD81 both 25.4796 0.3547 26.1772 24.7821
BXD84 both 26.032 0.3547 26.7296 25.3345
BXD85 both 27.0186 0.5608 28.1216 25.9157
BXD86 both 26.4268 0.3762 27.1666 25.6869
BXD87 both 27.2918 0.3547 27.9894 26.5942
BXD89 both 26.9498 0.3547 27.6474 26.2523
BXD90 both 24.5589 0.4579 25.4594 23.6583
BXD96 both 25.8108 0.3547 26.5084 25.1132
BXD97 both 26.3273 0.3762 27.0672 25.5874
BXD98 both 26.67 0.4856 27.6252 25.7149
C57BL/6J both 25.312 0.3547 26.0096 24.6145
DBA/2J both 27.5757 0.3547 28.2732 26.8781




  GWAS USING LINEAR MIXED MODELS