Project measure / variable:   Crusio1   pyr_L

ID, description, units MPD:62065   pyr_L   size of stratum pyramidale (arbitrary units)    left  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
Procedure histopathology
Ontology mappings

  •   Or, add this measure to your collection.
       
  •     no folder
  •     put it in new folder  

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Crusio1 - size of stratum pyramidale (arbitrary units) left



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means243422.0   None 244520.0   None
Median of the strain means241415.0   None 237917.0   None
SD of the strain means± 40922.0 ± 30757.0
Coefficient of variation (CV)0.1681 0.1258
Min–max range of strain means183677.0   –   422221.0   None 169897.0   –   329045.0   None
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 117943203.9457 117943203.9457 0.0337 0.8544
strain 47 246483149400.852 5244322327.6777 1.4988 0.0234
sex:strain 47 196103052260.964 4172405367.2546 1.1924 0.1916
Residuals 343 1200170834904.99 3499040335.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 189534.0 0.0   1   0.0 0.0 189534.0, 189534.0 -1.32
BXD1 m 268869.0 0.0   1   0.0 0.0 268869.2, 268869.2 0.79
BXD100 f 248616.0 39639.0   5 17727.0 0.1594 191707.8, 296377.6 0.13
BXD100 m 241126.0 36431.0   5 16293.0 0.1511 208541.0, 296005.0 -0.11
BXD101 f 255709.0 15719.0   3 9075.0 0.0615 239580.4, 270983.6 0.3
BXD101 m 253594.0 38705.0   4 19353.0 0.1526 196634.4, 283171.4 0.3
BXD102 f 223574.0 38193.0   5 17080.0 0.1708 183328.6, 272278.4 -0.49
BXD102 m 224544.0 34233.0   5 15309.0 0.1525 175172.6, 271582.6 -0.65
BXD11 f 260537.0 35394.0   5 15828.0 0.1358 235462.4, 321340.6 0.42
BXD11 m 237917.0 18995.0   5 8495.0 0.0798 223043.4, 267529.0 -0.21
BXD13 f 227067.0 13714.0   5 6133.0 0.0604 208278.2, 246397.6 -0.4
BXD13 m 214687.0 39667.0   5 17739.0 0.1848 173724.2, 266744.2 -0.97
BXD14 f 228852.0 48295.0   5 21598.0 0.211 182732.0, 286441.6 -0.36
BXD14 m 319938.0 138251.0   5 61828.0 0.4321 228445.4, 564128.0 2.45
BXD15 f 236030.0 27903.0   5 12479.0 0.1182 218618.8, 285442.0 -0.18
BXD15 m 274972.0 19155.0   5 8566.0 0.0697 251285.8, 295211.8 0.99
BXD16 f 275167.0 26543.0   5 11870.0 0.0965 232141.4, 300564.6 0.78
BXD16 m 268706.0 50625.0   5 22640.0 0.1884 207407.4, 348158.4 0.79
BXD18 f 241415.0 0.0   1   0.0 0.0 241414.6, 241414.6 -0.05
BXD18 m 224767.0 0.0   1   0.0 0.0 224766.6, 224766.6 -0.64
BXD19 f 398354.0 0.0   1   0.0 0.0 398354.4, 398354.4 3.79
BXD19 m 233008.0 0.0   1   0.0 0.0 233007.8, 233007.8 -0.37
BXD2 f 246028.0 29487.0   5 13187.0 0.1199 223346.8, 291411.8 0.06
BXD2 m 265835.0 48475.0   5 21678.0 0.1823 233693.8, 346660.4 0.69
BXD21 f 259403.0 49741.0   5 22245.0 0.1918 210586.0, 339750.4 0.39
BXD21 m 232014.0 26416.0   6 10784.0 0.1139 205924.8, 269547.6 -0.41
BXD27 f 245762.0 29213.0   5 13064.0 0.1189 194466.2, 265605.4 0.06
BXD27 m 244019.0 49050.0   5 21936.0 0.201 193996.0, 309976.0 -0.02
BXD28 f 235662.0 50966.0   5 22793.0 0.2163 184601.2, 299488.6 -0.19
BXD28 m 240634.0 38398.0   5 17172.0 0.1596 205480.6, 294625.2 -0.13
BXD31 f 232206.0 28115.0   5 12573.0 0.1211 206923.0, 275852.6 -0.27
BXD31 m 219734.0 29972.0   4 14986.0 0.1364 190088.0, 259727.0 -0.81
BXD32 f 183677.0 17980.0   5 8041.0 0.0979 153633.2, 197750.8 -1.46
BXD32 m 224242.0 28503.0   5 12747.0 0.1271 200669.4, 256277.8 -0.66
BXD33 m 314270.0 0.0   1   0.0 0.0 314270.2, 314270.2 2.27
BXD34 f 256636.0 0.0   1   0.0 0.0 256635.8, 256635.8 0.32
BXD34 m 329045.0 0.0   1   0.0 0.0 329045.4, 329045.4 2.75
BXD39 f 215536.0 13651.0   5 6105.0 0.0633 202077.8, 238354.8 -0.68
BXD39 m 243375.0 32829.0   5 14682.0 0.1349 200483.4, 275843.6 -0.04
BXD40 f 259215.0 42721.0   5 19105.0 0.1648 189457.4, 300403.6 0.39
BXD40 m 260185.0 38968.0   5 17427.0 0.1498 208952.2, 298482.2 0.51
BXD42 f 255964.0 33952.0   5 15184.0 0.1326 216853.0, 293990.0 0.31
BXD42 m 243077.0 55434.0   5 24791.0 0.2281 189344.6, 335888.6 -0.05
BXD43 f 256070.0 28801.0   5 12880.0 0.1125 221130.4, 290877.4 0.31
BXD43 m 217982.0 6210.0   5 2777.0 0.0285 207924.0, 224403.2 -0.86
BXD44 f 210101.0 18099.0   5 8094.0 0.0861 186329.4, 236684.2 -0.81
BXD44 m 244341.0 29169.0   5 13045.0 0.1194 218200.2, 291290.6 -0.01
BXD48 f 245115.0 31332.0   5 14012.0 0.1278 190447.4, 269523.0 0.04
BXD48 m 230506.0 41200.0   5 18425.0 0.1787 196408.6, 301817.0 -0.46
BXD49 f 216277.0 19267.0   4 9633.0 0.0891 198332.2, 234657.2 -0.66
BXD49 m 244149.0 47355.0   5 21178.0 0.194 201777.8, 322178.2 -0.01
BXD50 f 183849.0 28977.0   5 12959.0 0.1576 153333.0, 223527.6 -1.46
BXD50 m 202815.0 58203.0   5 26029.0 0.287 149194.0, 294274.2 -1.36
BXD51 f 210303.0 21964.0   5 9823.0 0.1044 181756.6, 233965.8 -0.81
BXD51 m 232624.0 19337.0   5 8648.0 0.0831 210024.6, 256546.6 -0.39
BXD6 f 224511.0 40033.0   5 17903.0 0.1783 182166.8, 268043.8 -0.46
BXD6 m 260474.0 18711.0   4 9355.0 0.0718 233264.8, 275879.4 0.52
BXD61 f 213671.0 11713.0   5 5238.0 0.0548 195481.4, 225646.2 -0.73
BXD61 m 219826.0 22823.0   5 10207.0 0.1038 198372.2, 248006.4 -0.8
BXD62 f 216381.0 30551.0   5 13663.0 0.1412 184161.8, 263552.2 -0.66
BXD62 m 225471.0 28186.0   5 12605.0 0.125 186204.0, 260930.4 -0.62
BXD65 f 244818.0 43428.0   3 25073.0 0.1774 218349.4, 294938.4 0.03
BXD65 m 215694.0 38093.0   5 17036.0 0.1766 175085.0, 277234.8 -0.94
BXD66 f 208331.0 5522.0   2   3905.0 0.0265 204426.6, 212235.8 -0.86
BXD66 m 248483.0 51507.0   2   36421.0 0.2073 212062.0, 284903.6 0.13
BXD68 f 255033.0 56585.0   2   40011.0 0.2219 215021.6, 295044.2 0.28
BXD68 m 271348.0 47703.0   3 27541.0 0.1758 218431.2, 311050.2 0.87
BXD69 f 281011.0 16517.0   4 8259.0 0.0588 261707.4, 301034.8 0.92
BXD69 m 237607.0 45795.0   5 20480.0 0.1927 188292.8, 295481.4 -0.22
BXD70 f 245120.0 35702.0   5 15966.0 0.1457 217118.4, 306872.6 0.04
BXD70 m 258563.0 28627.0   5 12803.0 0.1107 227124.2, 295706.2 0.46
BXD71 m 232324.0 0.0   1   0.0 0.0 232324.0, 232324.0 -0.4
BXD73 f 258233.0 43356.0   5 19389.0 0.1679 205831.8, 313619.8 0.36
BXD73 m 237433.0 31487.0   5 14081.0 0.1326 196449.2, 284240.8 -0.23
BXD75 f 240715.0 16719.0   5 7477.0 0.0695 214765.2, 256895.0 -0.07
BXD75 m 233578.0 26480.0   5 11842.0 0.1134 199869.4, 270947.4 -0.36
BXD77 f 277777.0 64109.0   2   45332.0 0.2308 232444.6, 323109.0 0.84
BXD77 m 270871.0 30457.0   2   21536.0 0.1124 249334.8, 292407.0 0.86
BXD8 f 256736.0 32466.0   5 14519.0 0.1265 232569.8, 312583.2 0.33
BXD8 m 300937.0 35445.0   5 15851.0 0.1178 259429.8, 357244.8 1.83
BXD80 f 219062.0 15643.0   5 6996.0 0.0714 203989.6, 240824.4 -0.6
BXD80 m 233057.0 9667.0   5 4323.0 0.0415 225065.4, 247813.8 -0.37
BXD81 f 243666.0 15711.0   5 7026.0 0.0645 225227.6, 263114.6 0.01
BXD81 m 262944.0 21299.0   5 9525.0 0.081 246011.4, 293406.8 0.6
BXD84 f 247799.0 54628.0   5 24430.0 0.2205 180731.2, 309705.8 0.11
BXD84 m 235694.0 31918.0   5 14274.0 0.1354 206062.2, 285845.2 -0.29
BXD85 f 231032.0 12553.0   2   8877.0 0.0543 222155.0, 239908.2 -0.3
BXD85 m 169897.0 2266.0   2   1603.0 0.0133 168294.8, 171500.0 -2.43
BXD86 f 240107.0 22013.0   5 9844.0 0.0917 206546.0, 259176.6 -0.08
BXD86 m 266370.0 13847.0   4 6923.0 0.052 249996.0, 283616.0 0.71
BXD87 f 189011.0 34721.0   5 15528.0 0.1837 154061.2, 243038.2 -1.33
BXD87 m 193224.0 31298.0   5 13997.0 0.162 146827.4, 230826.6 -1.67
BXD89 f 266006.0 51627.0   5 23088.0 0.1941 216697.4, 339381.8 0.55
BXD89 m 314440.0 37532.0   5 16785.0 0.1194 281216.6, 372868.6 2.27
BXD90 f 237741.0 30352.0   3 17524.0 0.1277 216985.2, 272575.6 -0.14
BXD90 m 233893.0 26450.0   3 15271.0 0.1131 218044.8, 264427.8 -0.35
BXD92 f 270724.0 0.0   1   0.0 0.0 270724.0, 270724.0 0.67
BXD92 m 252324.0 0.0   1   0.0 0.0 252324.2, 252324.2 0.25
BXD96 f 252286.0 46178.0   5 20651.0 0.183 200896.4, 305916.0 0.22
BXD96 m 216050.0 20497.0   5 9167.0 0.0949 195251.4, 244596.4 -0.93
BXD97 f 240518.0 44281.0   5 19803.0 0.1841 215218.2, 319274.4 -0.07
BXD97 m 209878.0 19832.0   4 9916.0 0.0945 189523.4, 234373.6 -1.13
BXD98 f 200829.0 18254.0   2   12907.0 0.0909 187921.4, 213736.4 -1.04
BXD98 m 249565.0 18988.0   4 9494.0 0.0761 227413.4, 268874.4 0.16
C57BL/6J f 422221.0 429019.0   5 191863.0 1.0161 223856.4, 1189622.6 4.37
C57BL/6J m 212999.0 24238.0   5 10840.0 0.1138 181403.4, 243653.0 -1.02
DBA/2J f 221349.0 28608.0   5 12794.0 0.1292 180044.0, 259473.0 -0.54
DBA/2J m 234695.0 43539.0   5 19471.0 0.1855 206495.6, 311564.8 -0.32


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 248616.08 26453.8857 300648.341 196583.819
BXD100 m 241126.08 26453.8857 293158.341 189093.819
BXD101 f 255708.8 34151.8195 322882.1601 188535.4399
BXD101 m 253593.9 29576.3433 311767.7363 195420.0637
BXD102 f 223574.04 26453.8857 275606.301 171541.779
BXD102 m 224544.36 26453.8857 276576.621 172512.099
BXD11 f 260536.92 26453.8857 312569.181 208504.659
BXD11 m 237916.72 26453.8857 289948.981 185884.459
BXD13 f 227067.36 26453.8857 279099.621 175035.099
BXD13 m 214686.84 26453.8857 266719.101 162654.579
BXD14 f 228851.64 26453.8857 280883.901 176819.379
BXD14 m 319937.8 26453.8857 371970.061 267905.539
BXD15 f 236030.2 26453.8857 288062.461 183997.939
BXD15 m 274971.72 26453.8857 327003.981 222939.459
BXD16 f 275167.4 26453.8857 327199.661 223135.139
BXD16 m 268706.36 26453.8857 320738.621 216674.099
BXD2 f 246027.92 26453.8857 298060.181 193995.659
BXD2 m 265834.8 26453.8857 317867.061 213802.539
BXD21 f 259403.04 26453.8857 311435.301 207370.779
BXD21 m 232014.4667 24148.9832 279513.2051 184515.7282
BXD27 f 245761.52 26453.8857 297793.781 193729.259
BXD27 m 244019.28 26453.8857 296051.541 191987.019
BXD28 f 235661.68 26453.8857 287693.941 183629.419
BXD28 m 240633.8 26453.8857 292666.061 188601.539
BXD31 f 232206.32 26453.8857 284238.581 180174.059
BXD31 m 219733.75 29576.3433 277907.5863 161559.9137
BXD32 f 183676.72 26453.8857 235708.981 131644.459
BXD32 m 224242.2 26453.8857 276274.461 172209.939
BXD39 f 215535.92 26453.8857 267568.181 163503.659
BXD39 m 243374.76 26453.8857 295407.021 191342.499
BXD40 f 259214.88 26453.8857 311247.141 207182.619
BXD40 m 260185.44 26453.8857 312217.701 208153.179
BXD42 f 255963.8 26453.8857 307996.061 203931.539
BXD42 m 243077.44 26453.8857 295109.701 191045.179
BXD43 f 256069.52 26453.8857 308101.781 204037.259
BXD43 m 217981.72 26453.8857 270013.981 165949.459
BXD44 f 210101.16 26453.8857 262133.421 158068.899
BXD44 m 244340.52 26453.8857 296372.781 192308.259
BXD48 f 245114.56 26453.8857 297146.821 193082.299
BXD48 m 230505.84 26453.8857 282538.101 178473.579
BXD49 f 216277.1 29576.3433 274450.9363 158103.2637
BXD49 m 244149.4 26453.8857 296181.661 192117.139
BXD50 f 183848.64 26453.8857 235880.901 131816.379
BXD50 m 202815.2 26453.8857 254847.461 150782.939
BXD51 f 210302.92 26453.8857 262335.181 158270.659
BXD51 m 232624.4 26453.8857 284656.661 180592.139
BXD6 f 224511.2 26453.8857 276543.461 172478.939
BXD6 m 260474.3 29576.3433 318648.1363 202300.4637
BXD61 f 213671.04 26453.8857 265703.301 161638.779
BXD61 m 219825.92 26453.8857 271858.181 167793.659
BXD62 f 216381.4 26453.8857 268413.661 164349.139
BXD62 m 225470.92 26453.8857 277503.181 173438.659
BXD65 f 244818.1333 34151.8195 311991.4934 177644.7732
BXD65 m 215694.36 26453.8857 267726.621 163662.099
BXD66 f 208331.2 41827.2658 290601.4283 126060.9717
BXD66 m 248482.8 41827.2658 330753.0283 166212.5717
BXD68 f 255032.9 41827.2658 337303.1283 172762.6717
BXD68 m 271348.2667 34151.8195 338521.6268 204174.9066
BXD69 f 281010.6 29576.3433 339184.4363 222836.7637
BXD69 m 237606.6 26453.8857 289638.861 185574.339
BXD70 f 245119.64 26453.8857 297151.901 193087.379
BXD70 m 258562.92 26453.8857 310595.181 206530.659
BXD73 f 258233.08 26453.8857 310265.341 206200.819
BXD73 m 237432.6 26453.8857 289464.861 185400.339
BXD75 f 240714.6 26453.8857 292746.861 188682.339
BXD75 m 233578.24 26453.8857 285610.501 181545.979
BXD77 f 277776.8 41827.2658 360047.0283 195506.5717
BXD77 m 270870.9 41827.2658 353141.1283 188600.6717
BXD8 f 256735.64 26453.8857 308767.901 204703.379
BXD8 m 300936.72 26453.8857 352968.981 248904.459
BXD80 f 219062.48 26453.8857 271094.741 167030.219
BXD80 m 233056.56 26453.8857 285088.821 181024.299
BXD81 f 243666.16 26453.8857 295698.421 191633.899
BXD81 m 262944.36 26453.8857 314976.621 210912.099
BXD84 f 247799.32 26453.8857 299831.581 195767.059
BXD84 m 235693.64 26453.8857 287725.901 183661.379
BXD85 f 231031.6 41827.2658 313301.8283 148761.3717
BXD85 m 169897.4 41827.2658 252167.6283 87627.1717
BXD86 f 240106.68 26453.8857 292138.941 188074.419
BXD86 m 266370.0 29576.3433 324543.8363 208196.1637
BXD87 f 189011.08 26453.8857 241043.341 136978.819
BXD87 m 193224.36 26453.8857 245256.621 141192.099
BXD89 f 266005.84 26453.8857 318038.101 213973.579
BXD89 m 314440.04 26453.8857 366472.301 262407.779
BXD90 f 237740.7333 34151.8195 304914.0934 170567.3732
BXD90 m 233893.4667 34151.8195 301066.8268 166720.1066
BXD96 f 252286.04 26453.8857 304318.301 200253.779
BXD96 m 216050.0 26453.8857 268082.261 164017.739
BXD97 f 240517.64 26453.8857 292549.901 188485.379
BXD97 m 209877.6 29576.3433 268051.4363 151703.7637
BXD98 f 200828.9 41827.2658 283099.1283 118558.6717
BXD98 m 249564.7 29576.3433 307738.5363 191390.8637
C57BL/6J f 422220.6 26453.8857 474252.861 370188.339
C57BL/6J m 212998.84 26453.8857 265031.101 160966.579
DBA/2J f 221349.16 26453.8857 273381.421 169316.899
DBA/2J m 234694.52 26453.8857 286726.781 182662.259


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 244871.08 18705.7219 281663.4446 208078.7154
BXD101 both 254651.35 22589.3053 299082.3514 210220.3486
BXD102 both 224059.2 18705.7219 260851.5646 187266.8354
BXD11 both 249226.82 18705.7219 286019.1846 212434.4554
BXD13 both 220877.1 18705.7219 257669.4646 184084.7354
BXD14 both 274394.72 18705.7219 311187.0846 237602.3554
BXD15 both 255500.96 18705.7219 292293.3246 218708.5954
BXD16 both 271936.88 18705.7219 308729.2446 235144.5154
BXD2 both 255931.36 18705.7219 292723.7246 219138.9954
BXD21 both 245708.7533 17909.3653 280934.7605 210482.7461
BXD27 both 244890.4 18705.7219 281682.7646 208098.0354
BXD28 both 238147.74 18705.7219 274940.1046 201355.3754
BXD31 both 225970.035 19840.4143 264994.2307 186945.8393
BXD32 both 203959.46 18705.7219 240751.8246 167167.0954
BXD39 both 229455.34 18705.7219 266247.7046 192662.9754
BXD40 both 259700.16 18705.7219 296492.5246 222907.7954
BXD42 both 249520.62 18705.7219 286312.9846 212728.2554
BXD43 both 237025.62 18705.7219 273817.9846 200233.2554
BXD44 both 227220.84 18705.7219 264013.2046 190428.4754
BXD48 both 237810.2 18705.7219 274602.5646 201017.8354
BXD49 both 230213.25 19840.4143 269237.4457 191189.0543
BXD50 both 193331.92 18705.7219 230124.2846 156539.5554
BXD51 both 221463.66 18705.7219 258256.0246 184671.2954
BXD6 both 242492.75 19840.4143 281516.9457 203468.5543
BXD61 both 216748.48 18705.7219 253540.8446 179956.1154
BXD62 both 220926.16 18705.7219 257718.5246 184133.7954
BXD65 both 230256.2467 21599.5072 272740.4099 187772.0835
BXD66 both 228407.0 29576.3433 286580.8363 170233.1637
BXD68 both 263190.5833 26999.384 316295.7873 210085.3793
BXD69 both 259308.6 19840.4143 298332.7957 220284.4043
BXD70 both 251841.28 18705.7219 288633.6446 215048.9154
BXD73 both 247832.84 18705.7219 284625.2046 211040.4754
BXD75 both 237146.42 18705.7219 273938.7846 200354.0554
BXD77 both 274323.85 29576.3433 332497.6863 216150.0137
BXD8 both 278836.18 18705.7219 315628.5446 242043.8154
BXD80 both 226059.52 18705.7219 262851.8846 189267.1554
BXD81 both 253305.26 18705.7219 290097.6246 216512.8954
BXD84 both 241746.48 18705.7219 278538.8446 204954.1154
BXD85 both 200464.5 29576.3433 258638.3363 142290.6637
BXD86 both 253238.34 19840.4143 292262.5357 214214.1443
BXD87 both 191117.72 18705.7219 227910.0846 154325.3554
BXD89 both 290222.94 18705.7219 327015.3046 253430.5754
BXD90 both 235817.1 24148.9832 283315.8384 188318.3616
BXD96 both 234168.02 18705.7219 270960.3846 197375.6554
BXD97 both 225197.62 19840.4143 264221.8157 186173.4243
BXD98 both 225196.8 25613.8647 275576.8201 174816.7799
C57BL/6J both 317609.72 18705.7219 354402.0846 280817.3554
DBA/2J both 228021.84 18705.7219 264814.2046 191229.4754




  GWAS USING LINEAR MIXED MODELS