Project measure / variable:   Crusio1   supra_pct_R

ID, description, units MPD:62063   supra_pct_R   percentage of hippocampus that is suprapyramidal mossy fibers   [%]  right  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is suprapyramidal mossy fibers right



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means11.075   % 11.044   %
Median of the strain means10.978   % 10.96   %
SD of the strain means± 1.0373 ± 0.87117
Coefficient of variation (CV)0.0937 0.0789
Min–max range of strain means7.9059   –   14.059   % 9.5626   –   12.61   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0152 0.0152 0.0106 0.9182
strain 47 296.3419 6.3051 4.3801 < 0.0001
sex:strain 47 47.5665 1.0121 0.7031 0.9296
Residuals 343 493.7468 1.4395


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 11.247 0.0   1   0.0 0.0 11.24659184, 11.24659184 0.17
BXD1 m 11.606 0.0   1   0.0 0.0 11.60631611, 11.60631611 0.64
BXD100 f 9.8946 0.50597   5 0.22628 0.0511 9.327289132, 10.6201333 -1.14
BXD100 m 10.411 0.99552   5 0.44521 0.0956 9.379885005, 11.96361625 -0.73
BXD101 f 10.778 1.3333   3 0.76976 0.1237 9.252237251, 11.71813151 -0.29
BXD101 m 10.957 0.71944   4 0.35972 0.0657 10.05473729, 11.74058643 -0.1
BXD102 f 9.8867 1.8746   5 0.83836 0.1896 8.459970105, 13.0923684 -1.15
BXD102 m 9.6546 1.133   5 0.5067 0.1174 8.528532616, 10.84558518 -1.6
BXD11 f 11.175 0.81988   5 0.36666 0.0734 10.20623781, 12.42921503 0.1
BXD11 m 10.89 2.1513   5 0.96207 0.1975 7.801880247, 12.77707487 -0.18
BXD13 f 12.55 0.91512   5 0.40926 0.0729 11.11206693, 13.54091043 1.42
BXD13 m 12.58 0.76571   5 0.34243 0.0609 11.40057058, 13.44631649 1.76
BXD14 f 12.802 0.91267   5 0.40816 0.0713 11.584438, 13.72898648 1.67
BXD14 m 12.23 1.0984   5 0.49122 0.0898 10.92459018, 13.54786204 1.36
BXD15 f 11.859 1.2673   5 0.56674 0.1069 10.45758665, 13.36617804 0.76
BXD15 m 11.445 1.0818   5 0.48379 0.0945 10.18416976, 12.62087658 0.46
BXD16 f 10.507 1.5022   5 0.67181 0.143 8.776697513, 12.16222192 -0.55
BXD16 m 10.124 0.75732   5 0.33868 0.0748 9.157568078, 11.19327781 -1.06
BXD18 f 7.9059 0.0   1   0.0 0.0 7.905945925, 7.905945925 -3.06
BXD18 m 9.776 0.0   1   0.0 0.0 9.77600476, 9.77600476 -1.46
BXD19 f 14.059 0.0   1   0.0 0.0 14.05890612, 14.05890612 2.88
BXD19 m 11.917 0.0   1   0.0 0.0 11.91680531, 11.91680531 1.0
BXD2 f 9.7198 0.44127   5 0.19734 0.0454 9.314166436, 10.35656271 -1.31
BXD2 m 10.095 1.5473   5 0.69197 0.1533 8.778239493, 11.87694563 -1.09
BXD21 f 12.192 1.2863   5 0.57523 0.1055 10.58089612, 14.08365528 1.08
BXD21 m 11.296 0.84952   6 0.34681 0.0752 10.34949571, 12.35195269 0.29
BXD27 f 9.5732 0.86097   5 0.38504 0.0899 8.379772476, 10.65425215 -1.45
BXD27 m 10.356 0.58346   5 0.26093 0.0563 9.333962623, 10.72390694 -0.79
BXD28 f 10.729 1.567   5 0.7008 0.1461 8.222727646, 12.45415289 -0.33
BXD28 m 10.137 0.7153   5 0.31989 0.0706 8.868478923, 10.60677626 -1.04
BXD31 f 11.469 0.97948   5 0.43804 0.0854 10.60796621, 12.73978759 0.38
BXD31 m 12.144 1.5284   4 0.76419 0.1259 10.16481174, 13.80197123 1.26
BXD32 f 11.558 0.47568   5 0.21273 0.0412 11.04667807, 12.09258291 0.47
BXD32 m 12.153 1.5897   5 0.71096 0.1308 10.34205191, 14.40112352 1.27
BXD33 m 9.5946 0.0   1   0.0 0.0 9.594617692, 9.594617692 -1.66
BXD34 f 11.17 0.0   1   0.0 0.0 11.16985518, 11.16985518 0.09
BXD34 m 10.224 0.0   1   0.0 0.0 10.22363183, 10.22363183 -0.94
BXD39 f 11.867 1.3355   5 0.59726 0.1125 10.50841839, 13.61813901 0.76
BXD39 m 11.28 1.1036   5 0.49355 0.0978 9.884928159, 12.43923328 0.27
BXD40 f 12.185 1.1659   5 0.5214 0.0957 10.80024659, 13.35971244 1.07
BXD40 m 12.61 0.90756   5 0.40587 0.072 11.23999869, 13.39014654 1.8
BXD42 f 11.274 1.0653   5 0.4764 0.0945 10.10991367, 12.46004765 0.19
BXD42 m 10.858 0.84075   5 0.376 0.0774 9.591987361, 11.91882434 -0.21
BXD43 f 9.8734 1.4671   5 0.65611 0.1486 8.220926976, 12.10785051 -1.16
BXD43 m 9.9598 0.78235   5 0.34988 0.0786 8.730728176, 10.65627551 -1.24
BXD44 f 10.977 0.81874   5 0.36615 0.0746 9.765345188, 11.71067688 -0.09
BXD44 m 11.2 1.1585   5 0.51808 0.1034 9.712142673, 12.52227772 0.18
BXD48 f 10.978 0.91502   5 0.40921 0.0833 9.54503393, 12.0599285 -0.09
BXD48 m 10.102 1.0555   5 0.47203 0.1045 8.763693213, 11.51939113 -1.08
BXD49 f 10.866 0.82711   4 0.41356 0.0761 9.729876346, 11.58839878 -0.2
BXD49 m 10.528 1.5251   5 0.68206 0.1449 8.524231433, 11.95990679 -0.59
BXD50 f 10.974 0.48538   5 0.21707 0.0442 10.36517101, 11.64579884 -0.1
BXD50 m 11.439 0.68854   5 0.30792 0.0602 10.46774785, 12.30439312 0.45
BXD51 f 9.5905 1.7097   5 0.76458 0.1783 8.084029927, 12.04683582 -1.43
BXD51 m 10.326 0.89792   5 0.40156 0.087 8.894974271, 11.34171476 -0.82
BXD6 f 11.137 0.64005   5 0.28624 0.0575 10.37912728, 11.8217824 0.06
BXD6 m 12.474 0.25787   4 0.12893 0.0207 12.20491984, 12.80434191 1.64
BXD61 f 11.744 1.0636   5 0.47566 0.0906 10.44091079, 12.99805385 0.65
BXD61 m 12.497 0.76262   5 0.34105 0.061 11.20020829, 13.21003731 1.67
BXD62 f 10.878 0.68778   5 0.30758 0.0632 10.03634426, 11.92711462 -0.19
BXD62 m 11.143 0.64368   5 0.28786 0.0578 10.29758737, 11.95676014 0.11
BXD65 f 10.979 1.4273   3 0.82404 0.13 10.09893386, 12.62568932 -0.09
BXD65 m 10.673 1.4221   5 0.63599 0.1332 8.978609968, 12.66919413 -0.43
BXD66 f 11.115 0.35067   2   0.24796 0.0315 10.86717341, 11.36309902 0.04
BXD66 m 10.209 0.75598   2   0.53456 0.0741 9.674388888, 10.74351166 -0.96
BXD68 f 10.899 1.7934   2   1.2681 0.1646 9.630417297, 12.16663602 -0.17
BXD68 m 11.22 0.50699   3 0.29271 0.0452 10.81738775, 11.78946976 0.2
BXD69 f 10.666 1.3857   4 0.69285 0.1299 9.212228373, 12.54829001 -0.39
BXD69 m 11.108 1.6412   5 0.73395 0.1478 9.281331462, 13.49746784 0.07
BXD70 f 11.162 0.44347   5 0.19833 0.0397 10.39938936, 11.55675209 0.08
BXD70 m 10.888 0.68374   5 0.30578 0.0628 9.901503272, 11.65665293 -0.18
BXD71 m 10.979 0.0   1   0.0 0.0 10.9791489, 10.9791489 -0.08
BXD73 f 9.3983 0.57793   5 0.25846 0.0615 8.711613282, 10.25834574 -1.62
BXD73 m 10.67 0.49059   5 0.2194 0.046 9.969717949, 11.33191012 -0.43
BXD75 f 12.27 1.2407   5 0.55486 0.1011 10.59162251, 13.4698368 1.15
BXD75 m 12.25 2.9883   5 1.3364 0.2439 10.31253294, 17.468874 1.38
BXD77 f 10.851 2.1597   2   1.5271 0.199 9.323769055, 12.37803005 -0.22
BXD77 m 11.605 2.6314   2   1.8607 0.2267 9.744361092, 13.46568225 0.64
BXD8 f 11.831 1.2817   5 0.57319 0.1083 10.02620613, 13.24973217 0.73
BXD8 m 10.96 1.8691   5 0.83589 0.1705 8.142963156, 13.2754439 -0.1
BXD80 f 10.761 0.73841   5 0.33023 0.0686 9.982872614, 11.50224658 -0.3
BXD80 m 9.5626 0.41031   5 0.18349 0.0429 9.126803218, 10.11986168 -1.7
BXD81 f 11.331 1.5499   5 0.69312 0.1368 9.346807844, 12.73529472 0.25
BXD81 m 10.55 1.3331   5 0.5962 0.1264 9.139982763, 12.19036248 -0.57
BXD84 f 11.905 1.6172   5 0.72321 0.1358 9.487984711, 14.04139445 0.8
BXD84 m 12.265 0.85235   5 0.38118 0.0695 11.60191221, 13.44637951 1.4
BXD85 f 10.895 0.98379   2   0.69564 0.0903 10.1997396, 11.5910251 -0.17
BXD85 m 10.178 0.71613   2   0.50638 0.0704 9.671542352, 10.68429985 -0.99
BXD86 f 12.406 1.8785   5 0.84008 0.1514 10.8164736, 14.51265432 1.28
BXD86 m 12.562 0.44701   4 0.22351 0.0356 12.13117964, 13.03210504 1.74
BXD87 f 10.691 0.90863   5 0.40635 0.085 9.594774899, 12.04643638 -0.37
BXD87 m 10.759 0.72727   5 0.32525 0.0676 10.09427849, 11.86103466 -0.33
BXD89 f 10.52 1.5322   5 0.68521 0.1456 9.431081211, 13.13674775 -0.53
BXD89 m 9.9315 0.54612   5 0.24423 0.055 9.001464136, 10.38550176 -1.28
BXD90 f 11.594 1.6071   3 0.92785 0.1386 10.00606949, 13.21958944 0.5
BXD90 m 12.333 1.4914   3 0.86107 0.1209 11.03484373, 13.96192172 1.48
BXD92 f 10.635 0.0   1   0.0 0.0 10.63468533, 10.63468533 -0.42
BXD92 m 11.205 0.0   1   0.0 0.0 11.20536023, 11.20536023 0.18
BXD96 f 10.462 0.69089   5 0.30897 0.066 9.672846878, 11.40551579 -0.59
BXD96 m 10.562 0.92195   5 0.41231 0.0873 9.648731553, 11.8497557 -0.55
BXD97 f 10.286 1.2271   5 0.54876 0.1193 8.583990241, 11.88732983 -0.76
BXD97 m 11.31 1.3305   4 0.66525 0.1176 9.668252671, 12.74192792 0.3
BXD98 f 11.738 2.0748   2   1.4671 0.1768 10.27080665, 13.20495374 0.64
BXD98 m 11.637 2.572   4 1.286 0.221 9.16103343, 14.41498517 0.68
C57BL/6J f 9.9292 1.3749   5 0.61489 0.1385 8.221132226, 11.50440495 -1.1
C57BL/6J m 10.512 1.6454   5 0.73583 0.1565 7.721562931, 11.9211208 -0.61
DBA/2J f 13.22 1.1783   5 0.52696 0.0891 11.50138811, 14.49587284 2.07
DBA/2J m 11.505 0.31673   5 0.14165 0.0275 11.31485188, 12.06826026 0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 9.8946 0.5366 10.95 8.8393
BXD100 m 10.4106 0.5366 11.4659 9.3552
BXD101 f 10.7781 0.6927 12.1406 9.4156
BXD101 m 10.9574 0.5999 12.1373 9.7774
BXD102 f 9.8867 0.5366 10.9421 8.8313
BXD102 m 9.6546 0.5366 10.7099 8.5992
BXD11 f 11.1754 0.5366 12.2308 10.1201
BXD11 m 10.8898 0.5366 11.9452 9.8345
BXD13 f 12.5497 0.5366 13.6051 11.4944
BXD13 m 12.5799 0.5366 13.6353 11.5245
BXD14 f 12.8024 0.5366 13.8577 11.747
BXD14 m 12.2299 0.5366 13.2852 11.1745
BXD15 f 11.8591 0.5366 12.9145 10.8037
BXD15 m 11.4454 0.5366 12.5008 10.3901
BXD16 f 10.507 0.5366 11.5623 9.4516
BXD16 m 10.1243 0.5366 11.1796 9.0689
BXD2 f 9.7198 0.5366 10.7752 8.6645
BXD2 m 10.095 0.5366 11.1504 9.0396
BXD21 f 12.192 0.5366 13.2474 11.1366
BXD21 m 11.2958 0.4898 12.2592 10.3324
BXD27 f 9.5732 0.5366 10.6285 8.5178
BXD27 m 10.3561 0.5366 11.4115 9.3007
BXD28 f 10.7289 0.5366 11.7842 9.6735
BXD28 m 10.1369 0.5366 11.1923 9.0816
BXD31 f 11.469 0.5366 12.5244 10.4136
BXD31 m 12.1438 0.5999 13.3238 10.9639
BXD32 f 11.5583 0.5366 12.6137 10.5029
BXD32 m 12.1526 0.5366 13.2079 11.0972
BXD39 f 11.867 0.5366 12.9223 10.8116
BXD39 m 11.2801 0.5366 12.3355 10.2247
BXD40 f 12.1849 0.5366 13.2403 11.1296
BXD40 m 12.6104 0.5366 13.6657 11.555
BXD42 f 11.2737 0.5366 12.329 10.2183
BXD42 m 10.8585 0.5366 11.9138 9.8031
BXD43 f 9.8734 0.5366 10.9288 8.818
BXD43 m 9.9598 0.5366 11.0152 8.9044
BXD44 f 10.9765 0.5366 12.0319 9.9212
BXD44 m 11.2001 0.5366 12.2555 10.1448
BXD48 f 10.9784 0.5366 12.0338 9.9231
BXD48 m 10.102 0.5366 11.1574 9.0466
BXD49 f 10.8658 0.5999 12.0457 9.6858
BXD49 m 10.5278 0.5366 11.5832 9.4725
BXD50 f 10.9739 0.5366 12.0293 9.9185
BXD50 m 11.4385 0.5366 12.4939 10.3831
BXD51 f 9.5905 0.5366 10.6459 8.5351
BXD51 m 10.3265 0.5366 11.3819 9.2711
BXD6 f 11.1372 0.5366 12.1926 10.0818
BXD6 m 12.4737 0.5999 13.6536 11.2937
BXD61 f 11.7436 0.5366 12.7989 10.6882
BXD61 m 12.4966 0.5366 13.552 11.4413
BXD62 f 10.8778 0.5366 11.9331 9.8224
BXD62 m 11.143 0.5366 12.1984 10.0877
BXD65 f 10.9789 0.6927 12.3414 9.6164
BXD65 m 10.6726 0.5366 11.7279 9.6172
BXD66 f 11.1151 0.8484 12.7838 9.4465
BXD66 m 10.209 0.8484 11.8776 8.5403
BXD68 f 10.8985 0.8484 12.5672 9.2298
BXD68 m 11.2202 0.6927 12.5826 9.8577
BXD69 f 10.6657 0.5999 11.8456 9.4857
BXD69 m 11.1075 0.5366 12.1629 10.0521
BXD70 f 11.1624 0.5366 12.2178 10.107
BXD70 m 10.8876 0.5366 11.943 9.8323
BXD73 f 9.3983 0.5366 10.4537 8.3429
BXD73 m 10.6696 0.5366 11.7249 9.6142
BXD75 f 12.2703 0.5366 13.3257 11.215
BXD75 m 12.2496 0.5366 13.3049 11.1942
BXD77 f 10.8509 0.8484 12.5196 9.1822
BXD77 m 11.605 0.8484 13.2737 9.9363
BXD8 f 11.8313 0.5366 12.8867 10.776
BXD8 m 10.96 0.5366 12.0154 9.9046
BXD80 f 10.7614 0.5366 11.8167 9.706
BXD80 m 9.5626 0.5366 10.618 8.5072
BXD81 f 11.3312 0.5366 12.3865 10.2758
BXD81 m 10.5499 0.5366 11.6052 9.4945
BXD84 f 11.9055 0.5366 12.9608 10.8501
BXD84 m 12.2648 0.5366 13.3201 11.2094
BXD85 f 10.8954 0.8484 12.5641 9.2267
BXD85 m 10.1779 0.8484 11.8466 8.5092
BXD86 f 12.4064 0.5366 13.4618 11.351
BXD86 m 12.5616 0.5999 13.7416 11.3817
BXD87 f 10.6906 0.5366 11.7459 9.6352
BXD87 m 10.7594 0.5366 11.8148 9.704
BXD89 f 10.5199 0.5366 11.5752 9.4645
BXD89 m 9.9315 0.5366 10.9868 8.8761
BXD90 f 11.5944 0.6927 12.9569 10.232
BXD90 m 12.3327 0.6927 13.6952 10.9702
BXD96 f 10.4618 0.5366 11.5171 9.4064
BXD96 m 10.5625 0.5366 11.6179 9.5071
BXD97 f 10.286 0.5366 11.3413 9.2306
BXD97 m 11.3097 0.5999 12.4896 10.1297
BXD98 f 11.7379 0.8484 13.4066 10.0692
BXD98 m 11.6368 0.5999 12.8167 10.4569
C57BL/6J f 9.9292 0.5366 10.9846 8.8738
C57BL/6J m 10.5122 0.5366 11.5676 9.4569
DBA/2J f 13.2197 0.5366 14.2751 12.1644
DBA/2J m 11.5047 0.5366 12.56 10.4493


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 10.1526 0.3794 10.8989 9.4063
BXD101 both 10.8677 0.4582 11.7689 9.9665
BXD102 both 9.7706 0.3794 10.5169 9.0244
BXD11 both 11.0326 0.3794 11.7789 10.2864
BXD13 both 12.5648 0.3794 13.3111 11.8186
BXD14 both 12.5161 0.3794 13.2624 11.7699
BXD15 both 11.6523 0.3794 12.3985 10.906
BXD16 both 10.3156 0.3794 11.0619 9.5694
BXD2 both 9.9074 0.3794 10.6537 9.1612
BXD21 both 11.7439 0.3633 12.4584 11.0294
BXD27 both 9.9646 0.3794 10.7109 9.2184
BXD28 both 10.4329 0.3794 11.1792 9.6866
BXD31 both 11.8064 0.4024 12.5979 11.0149
BXD32 both 11.8554 0.3794 12.6017 11.1092
BXD39 both 11.5735 0.3794 12.3198 10.8273
BXD40 both 12.3976 0.3794 13.1439 11.6514
BXD42 both 11.0661 0.3794 11.8123 10.3198
BXD43 both 9.9166 0.3794 10.6629 9.1703
BXD44 both 11.0883 0.3794 11.8346 10.3421
BXD48 both 10.5402 0.3794 11.2865 9.794
BXD49 both 10.6968 0.4024 11.4883 9.9053
BXD50 both 11.2062 0.3794 11.9525 10.46
BXD51 both 9.9585 0.3794 10.7047 9.2122
BXD6 both 11.8054 0.4024 12.597 11.0139
BXD61 both 12.1201 0.3794 12.8664 11.3739
BXD62 both 11.0104 0.3794 11.7567 10.2642
BXD65 both 10.8257 0.4381 11.6874 9.964
BXD66 both 10.662 0.5999 11.842 9.4821
BXD68 both 11.0593 0.5476 12.1365 9.9822
BXD69 both 10.8866 0.4024 11.6781 10.0951
BXD70 both 11.025 0.3794 11.7713 10.2787
BXD73 both 10.0339 0.3794 10.7802 9.2877
BXD75 both 12.2599 0.3794 13.0062 11.5137
BXD77 both 11.228 0.5999 12.4079 10.048
BXD8 both 11.3957 0.3794 12.1419 10.6494
BXD80 both 10.162 0.3794 10.9082 9.4157
BXD81 both 10.9405 0.3794 11.6868 10.1943
BXD84 both 12.0851 0.3794 12.8314 11.3389
BXD85 both 10.5367 0.5999 11.7166 9.3567
BXD86 both 12.484 0.4024 13.2755 11.6925
BXD87 both 10.725 0.3794 11.4712 9.9787
BXD89 both 10.2257 0.3794 10.9719 9.4794
BXD90 both 11.9636 0.4898 12.927 11.0001
BXD96 both 10.5121 0.3794 11.2584 9.7659
BXD97 both 10.7978 0.4024 11.5893 10.0063
BXD98 both 11.6873 0.5195 12.7092 10.6655
C57BL/6J both 10.2207 0.3794 10.967 9.4745
DBA/2J both 12.3622 0.3794 13.1084 11.6159




  GWAS USING LINEAR MIXED MODELS